STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli BL21(DE3) proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
Order Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
First Level
Secretion
System
First Level
Targeting
Chaperoning
Second Level
Secretion
System
Second Level
Targeting
Chaperoning
E.coli Core
Proteome
(yes/no)
basic proteome
C5W2M6_ECOBD
C5W2M6
yaiV
B21_00326 ECD_00322
Predicted DNA-binding transcriptional regulator
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBG8_ECOBD
C6EBG8
lasT

yjtD

B21_04244 ECBD_3617 ECD_04279
Predicted rRNA methyltransferase (RNA methyltransferase, TrmH family, group 1)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBG9_ECOBD
C6EBG9
yjjY
B21_04243 ECBD_3618 ECD_04278
Putative uncharacterized protein (Putative uncharacterized protein yjjY)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBH7_ECOBD
C6EBH7
yjjX
B21_04235 ECBD_3626 ECD_04270
UPF0244 protein yjjX
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBI5_ECOBD
C6EBI5
lplA
B21_04227 ECBD_3634 ECD_04262
Lipoate-protein ligase A (EC 6.-.-.-) (Lipoyltransferase and lipoate-protein ligase) (EC 2.7.7.63)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBI6_ECOBD
C6EBI6
 
ECBD_3635 ECD_04261
Helix-turn-helix domain protein (Putative uncharacterized protein)
Cytoplasmic
A
 
 
 
 
 
 
yes
C5W2Q4_ECOBD
C5W2Q4
ykiA
B21_00343 ECD_00339
Predicted protein (Putative uncharacterized protein ykiA)
Cytoplasmic
A
 
 
 
 
 
 
no
C6EBJ1_ECOBD
C6EBJ1
yjjI
B21_04222 ECBD_3640 ECD_04256
Putative uncharacterized protein (Putative uncharacterized protein yjjI)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBJ2_ECOBD
C6EBJ2
yjjW
B21_04221 ECBD_3641 ECD_04255
Predicted pyruvate formate lyase activating enzyme (Radical SAM domain protein)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBJ3_ECOBD
C6EBJ3
yjjV
B21_04220 ECBD_3642 ECD_04254
Predicted DNase (TatD-related deoxyribonuclease)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBJ4_ECOBD
C6EBJ4
yjjU
B21_04219 ECBD_3643 ECD_04253
Patatin (Predicted esterase)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBJ7_ECOBD
C6EBJ7
prfC
B21_04216 ECBD_3646 ECD_04250
Peptide chain release factor 3 (RF-3)
Cytoplasmic
A
Cytoplasm
 
 
 
 
yes
yes
C6EBJ8_ECOBD
C6EBJ8
yjjG
B21_04215 ECBD_3647 ECD_04249
HAD-superfamily hydrolase, subfamily IA, variant 1 (Nucleotidase)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBJ9_ECOBD
C6EBJ9
rimI
B21_04214 ECBD_3648 ECD_04248
Ribosomal-protein-alanine N-acetyltransferase (EC 2.3.1.128) (Ribosomal-protein-alanine acetyltransferase) (EC 2.3.1.128)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBK8_ECOBD
C6EBK8
dnaT
B21_04205 ECBD_3657 ECD_04239
Primosomal protein 1 (Primosomal protein I)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBK9_ECOBD
C6EBK9
dnaC
B21_04204 ECBD_3658 ECD_04238
AAA ATPase (DNA biosynthesis protein)
Cytoplasmic
A
 
 
 
 
 
yes
yes
C6EBL6_ECOBD
C6EBL6
hpaG

ybl228

B21_04196 ECBD_3666 ECD_04230
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit) (EC 5.3.3.10)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBL7_ECOBD
C6EBL7
ybl227

hpaE

B21_04195 ECBD_3667 ECD_04229
5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase (5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBL8_ECOBD
C6EBL8
hpaD

ybl226

B21_04194 ECBD_3668 ECD_04228
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15) (Homoprotocatechuate dyoxygenase)
Cytoplasmic
A
 
 
 
 
 
 
yes
C6EBL9_ECOBD
C6EBL9
hpaF

ybl225

B21_04193 ECBD_3669 ECD_04227
5-carboxymethyl-2-hydroxymuconate Delta-isomerase (EC 5.3.3.10) (5-carboxymethyl-2-hydroxymuconate delta-isomerase)
Cytoplasmic
A
 
 
 
 
 
 
yes
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