STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli BL21(DE3) proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
Order Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
First Level
Secretion
System
First Level
Targeting
Chaperoning
Second Level
Secretion
System
Second Level
Targeting
Chaperoning
E.coli Core
Proteome
(yes/no)
basic proteome
C5W449_ECOBD
C5W449
ybl55
B21_01153
Putative uncharacterized protein ybl55
Outer Membrane b-barrel protein
H
 
 
 
 
 
 
yes
C5W450_ECOBD
C5W450
ybl56
B21_01154
Putative uncharacterized protein ybl56
Outer Membrane b-barrel protein
H
 
 
 
Autotransporter(T5S)
 
 
yes
C5W453_ECOBD
C5W453
ymgH
B21_01157
Predicted protein
Outer Membrane b-barrel protein
H
 
 
 
 
 
 
yes
C5W454_ECOBD
C5W454
ycgI
B21_01158 ECD_01148
Predicted protein (Putative uncharacterized protein ycgI)
Outer Membrane b-barrel protein
H
Cytoplasm
 
 
 
 
 
no
C6EDC0_ECOBD
C6EDC0
ybl169
B21_03479 ECBD_0054 ECD_03531
Outer membrane autotransporter barrel domain protein (Putative uncharacterized protein)
Outer Membrane b-barrel protein
H
 
 
 
Autotransporter(T5S)
 
 
yes
C5W4D2_ECOBD
C5W4D2
ydeU
B21_01481
Conserved protein
Outer Membrane b-barrel protein
H
 
 
 
Autotransporter(T5S)
 
 
yes
C6EEK8_ECOBD
C6EEK8
 
ECBD_2128
Outer membrane autotransporter barrel domain protein
Outer Membrane b-barrel protein
H
 
 
 
Autotransporter(T5S)
 
 
no
C6EGR5_ECOBD
C6EGR5
ycgV
B21_01187 ECBD_2420 ECD_01177
Outer membrane autotransporter barrel domain protein (Predicted adhesin)
Outer Membrane b-barrel protein
H
 
 
 
Autotransporter(T5S)
 
 
yes
C6EB78_ECOBD
C6EB78
yoeA
B21_01892 ECBD_1654
Putative uncharacterized protein
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
 
no
C6EB89_ECOBD
C6EB89
 
ECBD_1667
Ig domain protein group 1 domain protein
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
 
yes
C6EBR6_ECOBD
C6EBR6
fimD
B21_04148 ECBD_3718 ECD_04186
Fimbrial biogenesis outer membrane usher protein (Outer membrane usher protein, type 1 fimbrial synthesis)
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
 
BAM: β-Barrel Assembly Machinery
 
 
yes
C6EC47_ECOBD
C6EC47
mipA
B21_01739 ECBD_1862 ECD_01751
MltA-interacting MipA family protein (Scaffolding protein for murein synthesizing machinery)
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
yes
yes
C6EC65_ECOBD
C6EC65
fecA
B21_04120 ECBD_3747 ECD_04157
Ferric citrate outer membrane transporter (TonB-dependent siderophore receptor)
Outer Membrane b-barrel protein
H
Cell outer membrane
SEC
 
BAM: β-Barrel Assembly Machinery
SurA
 
yes
C6ECC5_ECOBD
C6ECC5
ytfM
B21_04054 ECBD_3810 ECD_04091
Predicted outer membrane protein and surface antigen (Surface antigen (D15))
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
yes
yes
C5W0Q5_ECOBD
C5W0Q5
nmpC_2
B21_00508
NmpC, inner pseudogene
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
 
yes
C6EDI7_ECOBD
C6EDI7
ybl151
B21_03411 ECBD_0123 ECD_03460
Putative adhesin (YadA domain protein)
Outer Membrane b-barrel protein
H
 
SEC
 
Autotransporter(T5S)
 
 
no
C6EDN2_ECOBD
C6EDN2
uidC
B21_01574 ECBD_2030 ECD_01584
Outer membrane porin (Predicted outer membrane porin protein)
Outer Membrane b-barrel protein
H
 
SEC
 
BAM: β-Barrel Assembly Machinery
 
 
yes
C6EDY6_ECOBD
C6EDY6
lamB
B21_03868 ECBD_3999 ECD_03908
Maltoporin (Porin LamB type)
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
 
BAM: β-Barrel Assembly Machinery
SURA / SKP / DEGP
yes
yes
C6EE92_ECOBD
C6EE92
yiaT
B21_03390 ECBD_0147 ECD_03439
MltA-interacting MipA family protein (Putative uncharacterized protein yiaT)
Outer Membrane b-barrel protein
H
 
SEC
 
 
 
 
yes
C6EED3_ECOBD
C6EED3
yhjY
B21_03349 ECBD_0189 ECD_03398
Putative uncharacterized protein (Putative uncharacterized protein yhjY)
Outer Membrane b-barrel protein
H
 
SEC
 
Autotransporter(T5S)
 
 
yes
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