STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli BL21(DE3) proteome

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
Order Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
First Level
Secretion
System
First Level
Targeting
Chaperoning
Second Level
Secretion
System
Second Level
Targeting
Chaperoning
E.coli Core
Proteome
(yes/no)
basic proteome
C5W292_ECOBD
C5W292
ybl53
B21_00857 ECD_00851
Prophage P2 OGR-like protein (Ybl53)
Nucleoid
N
Cell membrane | Lipid-anchor
 
 
 
 
 
no
C6EB34_ECOBD
C6EB34
 
ECBD_3599
Transcriptional regulator, LysR family
Nucleoid
N
 
 
 
 
 
yes
yes
C6EB68_ECOBD
C6EB68
 
ECBD_1642
Transcriptional regulator, LysR family
Nucleoid
N
 
 
 
 
 
yes
yes
C6EB83_ECOBD
C6EB83
nac
B21_01887 ECBD_1660 ECD_01898
DNA-binding transcriptional dual regulator of nitrogen assimilation (Transcriptional regulator, LysR family)
Nucleoid
N
 
 
 
 
 
yes
yes
C6EB84_ECOBD
C6EB84
cbl
B21_01886 ECBD_1661 ECD_01897
DNA-binding transcriptional activator of cysteine biosynthesis (Transcriptional regulator, LysR family)
Nucleoid
N
 
 
 
 
 
yes
yes
C5W2G0_ECOBD
C5W2G0
matA

ykgK

B21_00256 ECD_00253
Predicted regulator
Nucleoid
N
Cytoplasm
 
 
 
 
 
yes
C6EBB4_ECOBD
C6EBB4
 
ECBD_1694
Transcriptional regulator, LuxR family
Nucleoid
N
 
 
 
 
 
 
yes
C5W2J7_ECOBD
C5W2J7
mhpR
B21_00304
MhpR transcriptional activator
Nucleoid
N
 
 
 
 
 
 
yes
C6EBD9_ECOBD
C6EBD9
 
ECBD_1720
RNA polymerase sigma factor
Nucleoid
N
 
 
 
 
 
 
yes
C6EBE5_ECOBD
C6EBE5
 
ECBD_1726
Transcriptional regulator, LuxR family
Nucleoid
N
 
 
 
 
 
 
yes
C6EBE8_ECOBD
C6EBE8
 
ECBD_1729
Two component transcriptional regulator, LuxR family
Nucleoid
N
 
 
 
 
 
 
yes
C6EBH3_ECOBD
C6EBH3
creB
B21_04239 ECBD_3622 ECD_04274
DNA-binding response regulator in two-component regulatory system with CreC (Two component transcriptional regulator, winged helix family)
Nucleoid
N
 
 
 
 
 
yes
yes
C6EBH5_ECOBD
C6EBH5
rob
B21_04237 ECBD_3624 ECD_04272
DNA-binding transcriptional activator (Transcriptional regulator, AraC family)
Nucleoid
N
 
 
 
 
 
yes
yes
C6EBH8_ECOBD
C6EBH8
trpR
B21_04234 ECBD_3627 ECD_04269
Trp operon repressor
Nucleoid
N
Cytoplasm
 
 
 
 
 
yes
C5W2Q7_ECOBD
C5W2Q7
rdgC
B21_00346 ECD_00342
RdgC (Recombination associated protein)
Nucleoid
N
Cytoplasm | nucleoid
 
 
 
 
yes
yes
C6EBK0_ECOBD
C6EBK0
holD
B21_04213 ECBD_3649 ECD_04247
DNA polymerase III subunit psi (EC 2.7.7.7) (DNA polymerase III, psi subunit) (EC 2.7.7.7)
Nucleoid
N
 
 
 
 
 
 
yes
C6EBK4_ECOBD
C6EBK4
bglJ
B21_04209 ECBD_3653 ECD_04243
DNA-binding transcriptional activator (Transcriptional regulator, LuxR family)
Nucleoid
N
 
 
 
 
 
yes
yes
C6EBK5_ECOBD
C6EBK5
yjjQ
B21_04208 ECBD_3654 ECD_04242
Predicted DNA-binding transcriptional regulator (Transcriptional regulator, LuxR family)
Nucleoid
N
 
 
 
 
 
yes
yes
C6EBL5_ECOBD
C6EBL5
hpaR
ECBD_3665 ECD_04231
Homoprotocatechuate degradative operon repressor (Transcriptional regulator, MarR family)
Nucleoid
N
 
 
 
 
 
 
yes
C6EBP3_ECOBD
C6EBP3
yjiM
B21_04167 ECBD_3695 ECD_04204
2-hydroxyglutaryl-CoA dehydratase D-component (Predicted 2-hydroxyglutaryl-CoA dehydratase)
Nucleoid
N
 
 
 
 
 
 
yes
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