STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

Chaperonome of E.coli K-12 (MG1655): Cross-comparisson plots


Prediction tools used:
  - Dynamine (Backbone dynamics)
  - EFoldMine (Early folding and foldon regions)
  - IUPred2A (Disorder and Intrinsically Disordered Regions)
  - Hydrophobicity plot (Kyte&Doolittle scale)
See “References” below for more information.”

References:
  - Dynamine Website, Role: Backbone dynamics of amino acids. Ref: PMID:24225580
  - EFoldMine Website, Role: Early folding prediction and foldons. Ref: PMID:28821744
  - IUPred2A Website, Role: Prediction of disorder and Intrinsically Unstructured/Disordered Regionsin in proteins - tool. Ref: PMID:29860432
  - Hydrophobicity plot Website, Role: Hydrophobicity of amino acids as described by Kyte&Doolit. Ref: PMID:7108955

Cytoplasmic:

Ribosomal:

IMP:

Secreted:

OMP:

An example of the protein cross-comparison plots for the Integral Inner Membrane protein SecY (P0AGA2):


For more information: Loos et al., 2019.

 

 ©2017 Copyright KU Leuven and FORTH/ICE-HT. Last Update: February 2019.