STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli K-12 (MG1655) Exportome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
OMPC_ECOLI
P06996
ompC

meoA par

b2215 JW2203
Bacteriophage N4 adsorption protein A
Outer Membrane b-barrel protein
H
Soluble IM Fraction
Cell outer membrane | Multi-pass membrane protein
Outer Membrane β-barrel protein (Experimental)
 
TF
SEC
SKP
BAM
yes
yes
PNTA_ECOLI
P07001
pntA
b1603 JW1595
NAD(P) transhydrogenase subunit alpha (EC 1.6.1.2) (Nicotinamide nucleotide transhydrogenase subunit alpha) (Pyridine nucleotide transhydrogenase subunit alpha)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
YBJO_ECOLI
P0AAZ0
ybjO
b0858 JW0842
Inner membrane protein ybjO
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YCBK_ECOLI
P0AB06
ycbK
b0926 JW0909
Uncharacterized protein ycbK
Periplasmic
G
N/A
 
Periplasmic
 
 
TAT
 
 
yes
yes
YCCF_ECOLI
P0AB12
yccF
b0961 JW0944
Inner membrane protein yccF
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
MCP2_ECOLI
P07017
tar

cheM

b1886 JW1875
Methyl-accepting chemotaxis protein II (MCP-II) (Aspartate chemoreceptor protein)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
MCP4_ECOLI
P07018
tap
b1885 JW1874
Methyl-accepting chemotaxis protein IV (MCP-IV) (Dipeptide chemoreceptor protein)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YFIB_ECOLI
P07021
yfiB
b2605 JW2586
Putative lipoprotein yfiB
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
USHA_ECOLI
P07024
ushA
b0480 JW0469
Protein ushA [Includes: UDP-sugar hydrolase (EC 3.6.1.45) (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) (EC 3.1.3.5)]
Periplasmic
G
Soluble IM Fraction
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
YCEK_ECOLI
P0AB31
yceK
b1050 JW5151
Uncharacterized protein yceK
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
YCFJ_ECOLI
P0AB35
ycfJ
b1110 JW1096
Uncharacterized protein ycfJ
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
BHSA_ECOLI
P0AB40
bhsA

comC ycfR

b1112 JW1098
Multiple stress resistance protein BhsA
Peripheral outer membrane protein facing the periplasm
F3
N/A
Periplasm
Periplasmic
 
 
SEC
 
 
yes
yes
PPA_ECOLI
P07102
appA
b0980 JW0963
Periplasmic AppA protein [Includes: Phosphoanhydride phosphohydrolase (EC 3.1.3.2) (pH 2.5 acid phosphatase) (AP); 4-phytase (EC 3.1.3.26)]
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBC
 
yes
yes
PUTP_ECOLI
P07117
putP
b1015 JW1001
Sodium/proline symporter (Proline permease) (Propionate transporter)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
PSTA_ECOLI
P07654
pstA

phoT

b3726 JW3704
Phosphate transport system permease protein pstA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
FHUD_ECOLI
P07822
fhuD
b0152 JW0148
Iron(3+)-hydroxamate-binding protein fhuD (Ferric hydroxamate uptake protein D) (Ferrichrome-binding periplasmic protein) (Iron(III)-hydroxamate-binding protein fhuD)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
yes
yes
YMGD_ECOLI
P0AB46
ymgD
b1171 JW5177
Uncharacterized protein ymgD
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
YCHH_ECOLI
P0AB49
ychH
b1205 JW1196
Uncharacterized protein ychH
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ATPZ_ECOLI
P0ABC0
atpI

uncI

b3739 JW5611
ATP synthase protein I
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
yes
yes
MRED_ECOLI
P0ABH4
mreD
b3249 JW3218
Rod shape-determining protein mreD
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
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