STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Exportome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Exportome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
FIMF_ECOLI
P08189
fimF
b4318 JW4281
Protein fimF
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
FIMG_ECOLI
P08190
fimG
b4319 JW4282
Protein fimG
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
FIMH_ECOLI
P08191
fimH
b4320 JW4283
Protein fimH
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
GLPT_ECOLI
P08194
glpT
b2240 JW2234
Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
CYOD_ECOLI
P0ABJ6
cyoD
b0429 JW0419
Cytochrome o ubiquinol oxidase protein cyoD (Ubiquinol oxidase chain D)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
CCMD_ECOLI
P0ABM5
ccmD

yojM

b2198 JW2186
Heme exporter protein D (Cytochrome c-type biogenesis protein CcmD)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
no
yes
EXBD_ECOLI
P0ABV2
exbD
b3005 JW2973
Biopolymer transport protein exbD
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
TOLR_ECOLI
P0ABV6
tolR
b0738 JW0728
Protein tolR
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored (Experimental)
 
SRP
SEC
 
 
yes
yes
CPDB_ECOLI
P08331
cpdB
b4213 JW4171
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase (EC 3.1.3.6) (EC 3.1.4.16)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA
 
no
yes
CRED_ECOLI
P08369
creD

cet

b4400 JW4363
Inner membrane protein creD
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
no
yes
SPPA_ECOLI
P08395
sppA
b1766 JW1755
Protease 4 (EC 3.4.21.-) (Endopeptidase IV) (Protease IV) (Signal peptide peptidase)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
PHOR_ECOLI
P08400
phoR

nmpB

b0400 JW0390
Phosphate regulon sensor protein phoR (EC 2.7.13.3)
Integral Inner Membrane
B
N/A
Cell inner membrane | Multi-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
FLIL_ECOLI
P0ABX8
fliL

cheC1 fla AI fla QI

b1944 JW1928
Flagellar protein FliL
Integral Inner Membrane
B
Soluble IM Fraction
Cell inner membrane | Single-pass membrane protein
Outer membrane Lipoprotein
 
SRP
SEC
 
 
no
yes
FLIQ_ECOLI
P0AC07
fliQ

flaQ

b1949 JW1933
Flagellar biosynthetic protein FliQ
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane proteinBacterial flagellum basal body
Integral Membrane Protein
flagellum
SRP
SEC
 
 
no
yes
CREC_ECOLI
P08401
creC

phoM

b4399 JW4362
Sensor protein creC (EC 2.7.13.3)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
yes
yes
DACC_ECOLI
P08506
dacC
b0839 JW0823
D-alanyl-D-alanine carboxypeptidase dacC (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (Penicillin-binding protein 6) (PBP-6)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell inner membrane | Peripheral membrane protein
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
DSDX_ECOLI
P08555
dsdX

yfdA yfdD

b2365 JW2362
DsdX permease
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
no
yes
PTV3B_ECOLI
P08722
bglF

bglC bglS

b3722 JW3700
PTS system beta-glucoside-specific EIIBCA component (EIIBCA-Bgl) (EII-Bgl) [Includes: Beta-glucoside-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system beta-glucoside-specific EIIB component); Beta-glucoside permease IIC component
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YAAH_ECOLI
P0AC98
yaaH
b0010 JW0009
Inner membrane protein yaaH
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
HOKC_ECOLI
P0ACG4
hokC

gef

b4412 JW5002 b0018.1
Uncharacterized protein yqeI
Periplasmic
G
N/A
Cell inner membrane | Single-pass type II membrane protein
Periplasmic
 
 
SEC
 
 
no
yes
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