STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Exportome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Exportome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
HEMX_ECOLI
P09127
hemX
b3803 JW3775
Putative uroporphyrinogen-III C-methyltransferase (Urogen-III methylase) (EC 2.1.1.107) (ORF X)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
no
yes
OMPT_ECOLI
P09169
ompT
b0565 JW0554
Protease 7 (EC 3.4.23.49) (Omptin) (Outer membrane protein 3B) (Protease A) (Protease VII)
Outer Membrane b-barrel protein
H
Soluble IM Fraction
Cell outer membrane | Multi-pass membrane protein
Outer Membrane β-barrel protein (Experimental)
 
SECB,TF
SEC
 
BAM
no
no
PTW3C_ECOLI
P09323
nagE

pstN

b0679 JW0665
PTS system N-acetylglucosamine-specific EIICBA component (EIICBA-Nag) (EII-Nag) [Includes: N-acetylglucosamine permease IIC component (PTS system N-acetylglucosamine-specific EIIC component); N-acetylglucosamine-specific phosphotransferase enzyme IIB comp
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
HOKD_ECOLI
P0ACG6
hokD

relF

b1562 JW1554
Protein hokD (Protein relF)
Periplasmic
G
N/A
Cell membrane | Single-pass membrane protein
Periplasmic
 
 
SEC
 
 
no
no
YDBJ_ECOLI
P0ACW2
ydbJ
b4529 JW5215
Uncharacterized protein ydbJ
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
YDCA_ECOLI
P0ACW4
ydcA
b1419 JW1416
Uncharacterized protein ydcA
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
YEAL_ECOLI
P0ACY6
yeaL
b1789 JW1778
UPF0756 membrane protein yeaL
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
MOTA_ECOLI
P09348
motA

flaJ

b1890 JW1879
Motility protein A (Chemotaxis protein MotA)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
GLPG_ECOLI
P09391
glpG
b3424 JW5687
Rhomboid protease glpG (EC 3.4.21.105) (Intramembrane serine protease)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP (exp)
SEC
 
 
yes
yes
GLPQ_ECOLI
P09394
glpQ
b2239 JW2233
Glycerophosphoryl diester phosphodiesterase (Glycerophosphodiester phosphodiesterase) (EC 3.1.4.46)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
DEDD_ECOLI
P09549
dedD
b2314 JW5378
Protein dedD. DedD is a cell division protein; it contains a C-terminal SPOR domain which targets the protein to the septal ring.
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
 
Membrane anchored
 
SRP
SEC
 
 
yes
yes
ARGT_ECOLI
P09551
argT
b2310 JW2307
Lysine-arginine-ornithine-binding periplasmic protein (LAO-binding protein)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
YOHC_ECOLI
P0AD17
yohC
b2135 JW5356
Inner membrane protein yohC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
YOHK_ECOLI
P0AD19
yohK
b2142 JW2130
Inner membrane protein yohK
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
no
yes
UHPB_ECOLI
P09835
uhpB
b3668 JW3643
Sensor protein uhpB (EC 2.7.13.3)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
UHPC_ECOLI
P09836
uhpC
b3667 JW3642
Regulatory protein uhpC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
UBIB_ECOLI
P0A6A0
ubiB

aarF yigQ yigR yigS

b3835 JW3812
Probable ubiquinone biosynthesis protein ubiB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
CLSA_ECOLI
P0A6H8
clsA

cls nov yciJ

b1249 JW1241
Cardiolipin synthase (CL synthase) (EC 2.7.8.-)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YFHG_ECOLI
P0AD44
yfhG
b2555 JW2539
Uncharacterized protein yfhG
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
TAT,SEC
 
LOL
yes
yes
YPHA_ECOLI
P0AD47
yphA
b2543 JW2527
Inner membrane protein yphA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
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