STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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E.coli K-12 (MG1655) Exportome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YKFM_ECOLI
A5A605
ykfM
b4586
integral IM protein (SEC in IM), YkfM
Integral Inner Membrane
B
IM (predicted)
Membrane
-
 
SRP
SEC
 
 
no
yes
YNCL_ECOLI
A5A615
yncL
b4598 JW1439.1
integral IM protein (SEC in IM), YncL
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YNEM_ECOLI
A5A616
yneM
b4599 JW1527.1
integral IM protein (SEC in IM), Small MgtS
Integral Inner Membrane
B
N/A
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YDGU_ECOLI
A5A617
ydgU
b4601 JW1589
integral IM protein (SEC in IM), YdgU
Integral Inner Membrane
B
IM (predicted)
 
-
 
SRP
SEC
 
 
no
yes
YNHF_ECOLI
A5A618
ynhF
b4602 JW1649.1
integral IM protein (SEC in IM), YnhF
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
-
 
SRP
SEC
 
 
no
yes
DINQ_ECOLI
A5A624
dinQ
b4613
integral IM protein (SEC in IM), DinQ
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
-
 
SRP
SEC
 
 
no
yes
TISB_ECOLI
A5A627
tisB

ysdB

b4618 JW3649
integral IM protein (SEC in IM), Small toxin TisB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
-
 
SRP
SEC
 
 
no
no
YTCA_ECOLI
A5A630
ytcA
b4622
integral IM protein (SEC in IM), YtcA
Integral Inner Membrane
B
IM (predicted)
Cell membrane
Integral Membrane Protein
 
 
SEC
 
 
no
yes
YTHA_ECOLI
A8DYQ1
ythA
b4655 JW5769.1
integral IM protein (SEC in IM), YthA
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
 
SEC
 
 
no
yes
YKGR_ECOLI
C1P5Z8
ykgR
b4671 JW5035.1
integral IM protein (SEC in IM), YkgR
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
SRP
SEC
 
 
no
yes
YMIB_ECOLI
C1P5Z9
ymiB
b4672 JW1278.1
integral IM protein (SEC in IM), Putative YmiB
Integral Inner Membrane
B
N/A
Membrane
-
 
SRP
SEC
 
 
no
yes
YOAK_ECOLI
C1P602
yoaK
b4676 JW5292.1
integral IM protein (SEC-YidC in IM), YoaK
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
SRP
SEC-YidC
 
 
no
yes
YOAJ_ECOLI
C1P603
yoaJ
b4675 JW5292.2
integral IM protein (SEC-YidC in IM), YoaJ
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
SRP
SEC-YidC
 
 
no
yes
YOHP_ECOLI
C1P609
yohP
b4679 JW5358.1
integral IM protein (SEC in IM), YohP
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
SRP
SEC
 
 
no
yes
YPDK_ECOLI
C1P610
ypdK
b4680 JW2375.1
integral IM protein (SEC in IM), YpdK
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
SRP
SEC
 
 
no
yes
SHOB_ECOLI
C1P611
shoB

ryfB yphI

b4687 JW2546.1
integral IM protein (SEC in IM), Small toxin ShoB
Integral Inner Membrane
B
N/A
Membrane
-
 
SRP
SEC
 
 
no
yes
YQFG_ECOLI
C1P614
yqfG
b4684 JW5470.1
integral IM protein (SEC in IM), YqfG
Integral Inner Membrane
B
N/A
 
-
 
SRP
SEC
 
 
no
yes
IBSD_ECOLI
C1P616
ibsD
b4664 JW3023.1
integral IM protein (SEC in IM), Small toxin IbsD
Integral Inner Membrane
B
N/A
Membrane
-
 
 
SEC
 
 
no
yes
PMRR_ECOLI
G3MTW7
pmrR
b4703 JW4072.1
integral IM protein (SEC in IM), Putative PmrR
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
 
SEC
 
 
no
 
GSPB_ECOLI
P03825
gspB

pinO pioO pno

b3322 JW3284
integral IM protein (SEC in IM), Putative general secretion pathway B GspB
Integral Inner Membrane
B
IM (predicted)
Cell membrane
Membrane anchored
 
SRP
SEC
 
 
no
yes
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