STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Exportome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Exportome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
BIRA_ECOLI
P06709
birA

bioR dhbB

b3973 JW3941
Bifunctional protein BirA [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. Deletion of BioR resulted in a 15-fold increase of bio operon transcription in the presence of high biotin levels.
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
 
Cytoplasmic
 
SRP
SEC
 
 
yes
yes
ARCD_ECOLI
P0AAE5
ydgI
b1605 JW1597
Putative arginine/ornithine antiporter
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein.
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
CADC_ECOLI
P23890
cadC
b4133 JW4094
Transcriptional activator CadC
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell membrane | Single-pass membrane protein.
Membrane anchored
 
SRP
SEC
 
 
no
yes
RODZ_ECOLI
P27434
rodZ

yfgA

b2516 JW2500
Cytoskeleton protein rodZ
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored
 
 
SEC
 
 
yes
yes
YGJI_ECOLI
P42590
ygjI
b3078 JW5512
Inner membrane transporter ygjI
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YBHD_ECOLI
P52696
ybhD
b0768 JW5896
Phenylacetic acid degradation protein paaB
Nucleoid, Integral Inner Membrane
N, B
N/A
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
AAER_ECOLI
P67662
aaeR

yhcS

b3243 JW3212
HTH-type transcriptional activator AaeR
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
 
Cytoplasmic
 
SRP
SEC
 
 
yes
yes
CLCB_ECOLI
P76175
clcB

mriT ynfJ

b1592 JW5263
Voltage-gated ClC-type chloride channel ClcB
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein.
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YQEI_ECOLI
Q46942
yqeI
b2847 JW2815
Uncharacterized J domain-containing protein djlB
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
 
Cytoplasmic
 
SRP
SEC
 
 
no
yes
Records 1 to 9 of 9     
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