STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Disulfideome of E.coli K-12 (MG1655) proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Disulfideome of E.coli K-12 (MG1655) proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YJCO_ECOLI
P0AF56
yjcO
b4078 JW4039
periplasmic protein (SEC through IM), Sel1-repeat-containing YjcO
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
PROX_ECOLI
P0AFM2
proX

proU

b2679 JW2654
periplasmic protein (SEC through IM), Glycine betaine/proline betaine-binding periplasmic ProX
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA,DSBA
 
yes
yes
UGPB_ECOLI
P0AG80
ugpB
b3453 JW3418
periplasmic protein (SEC through IM), sn-glycerol-3-phosphate-binding periplasmic UgpB
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA
 
yes
yes
SLT_ECOLI
P0AGC3
slt

sltY

b4392 JW4355
periplasmic protein (SEC through IM), Soluble lytic murein transglycosylase Slt
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
SODC_ECOLI
P0AGD1
sodC
b1646 JW1638
periplasmic protein (SEC through IM), Superoxide dismutase SodC
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
THIO2_ECOLI
P0AGG4
trxC

yfiG

b2582 JW2566
cytoplasmic protein, Thioredoxin 2 TrxC
Cytoplasmic
A
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
MEPA_ECOLI
P0C0T5
mepA
b2328 JW2325
periplasmic protein (SEC through IM), Penicillin-insensitive murein endopeptidase MepA
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA,DSBC
 
yes
yes
DEGP_ECOLI
P0C0V0
degP

htrA ptd

b0161 JW0157
periplasmic protein (SEC through IM), serine endoprotease DegP
Periplasmic
G
N/A
Cell inner membrane
Periplasmic (Experimental)
 
SECB
SEC
DSBA
 
yes
yes
GATZ_ECOLI
P0C8J8
gatZ
b2095 JW2082
cytoplasmic peripheral IM protein, D-tagatose-1,6-bisphosphate aldolase subunit GatZ
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Soluble IM Fraction
 
Cytoplasmic
 
TF
 
 
 
yes
yes
EFTU1_ECOLI
P0CE47
tufA
b3339 JW3301
cytoplasmic peripheral IM protein, Elongation factor Tu 1 TufA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
N/A
Cytoplasm Cell inner membrane; Peripheral membrane protein
Cytoplasmic (Experimental)
 
 
 
 
 
yes
yes
NADA_ECOLI
P11458
nadA

nicA

b0750 JW0733
cytoplasmic protein, Quinolinate synthase A NadA
Cytoplasmic
A
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
TREA_ECOLI
P13482
treA

osmA

b1197 JW1186
periplasmic protein (SEC through IM), trehalase TreA
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SKP
 
yes
yes
CHIA_ECOLI
P13656
chiA

yheB

b3338 JW3300
periplasmic & extra-cellular protein (SEC through IM), TSS secreted over OM), Probable bifunctional chitinase/lysozyme ChiA
Periplasmic, Extra-cellular
G, X
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
T2S
no
yes
FUMB_ECOLI
P14407
fumB
b4122 JW4083
cytoplasmic protein, Fumarate hydratase class I, anaerobic FumB
Cytoplasmic
A
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
SELD_ECOLI
P16456
selD

fdhB

b1764 JW1753
cytoplasmic protein, Selenide, water dikinase SelD
Cytoplasmic
A
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
CIRA_ECOLI
P17315
cirA

cir feuA

b2155 JW2142
OM b-barrel protein (SEC through IM, inserted in OM by BAM), Colicin I receptor CirA
Outer Membrane b-barrel protein
H
N/A
Cell outer membrane
Outer Membrane ??-barrel protein (Experimental)
 
 
SEC
DSBA,SKP
BAM
yes
yes
AGP_ECOLI
P19926
agp
b1002 JW0987
periplasmic protein (SEC through IM), Glucose-1-phosphatase Agp
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
TOLA_ECOLI
P19934
tolA

cim excC lky

b0739 JW0729
integral IM protein (SEC in IM), Tol-Pal system TolA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Membrane anchored (Experimental)
 
SRP
SEC
 
 
yes
yes
RNI_ECOLI
P21338
rna

rnsA

b0611 JW0603
periplasmic protein (SEC through IM), Ribonuclease I Rna
Periplasmic
G
N/A
Periplasm Cytoplasm
Periplasmic (Experimental)
 
 
SEC
DSBA,DSBC
 
yes
yes
ECOT_ECOLI
P23827
eco

eti

b2209 JW2197
periplasmic protein (SEC through IM), Eco
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
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