STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Disulfideome of E.coli K-12 (MG1655) proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Disulfideome of E.coli K-12 (MG1655) proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YTFQ_ECOLI
P39325
ytfQ
b4227 JW4186
periplasmic protein (SEC through IM), ABC transporter periplasmic-binding YtfQ
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA
 
yes
yes
OPGB_ECOLI
P39401
mdoB

opgB yjjO

b4359 JW5794
integral IM protein (SEC in IM), Phosphoglycerol transferase I MdoB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
RIR3_ECOLI
P39452
nrdE
b2675 JW2650
cytoplasmic protein, Ribonucleoside-diphosphate reductase 2 subunit alpha NrdE
Cytoplasmic
A
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
YGIL_ECOLI
P39834
ygiL
b3043 JW3011
Fimbrial periplasmic protein (SEC through IM), YgiL
Periplasmic
G
N/A
Fimbrium
Periplasmic
fimbriae
 
SEC
 
CU
no
yes
OPGD_ECOLI
P40120
mdoD

opgD ydcG yzzZ

b1424 JW1420
periplasmic protein (TAT-SEC through IM), Glucans biosynthesis D MdoD
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
TAT,SEC
 
 
no
yes
YRAH_ECOLI
P42913
yraH
b3142 JW3111
Fimbrial periplasmic protein (SEC through IM), YraH
Periplasmic
G
N/A
Fimbrium
Periplasmic
fimbriae
 
SEC
 
CU
no
yes
YRAJ_ECOLI
P42915
yraJ
b3144 JW3113
Fimbrial OM b-barrel protein (SEC through IM, inserted in OM by BAM), YraJ
Outer Membrane b-barrel protein
H
N/A
Cell outer membrane
Outer Membrane ??-barrel protein
fimbriae
 
SEC
 
BAM
no
yes
YHCD_ECOLI
P45420
yhcD
b3216 JW3183
Fimbrial OM b-barrel protein (SEC through IM, inserted in OM by BAM), YhcD
Outer Membrane b-barrel protein
H
N/A
Cell outer membrane
Outer Membrane ??-barrel protein
fimbriae
 
SEC
 
BAM
no
yes
LPOA_ECOLI
P45464
lpoA

yraM

b3147 JW3116
OM lipoprotein (SEC through IM), inserted in OM by LOL), Penicillin-binding activator LpoA
Outer Membrane Lipoprotein
I
Soluble IM Fraction
Cell outer membrane
Membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
AIS_ECOLI
P45565
ais

pmrG

b2252 JW2246
periplasmic protein (SEC through IM), polysaccharide core heptose Ais
Periplasmic
G
N/A
Periplasm
Membrane anchored
 
 
SEC
 
 
yes
yes
LUXS_ECOLI
P45578
luxS

ygaG

b2687 JW2662
cytoplasmic peripheral IM protein, S-ribosylhomocysteine lyase LuxS
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
no
yes
YHDW_ECOLI
P45766
yhdW
b3268 JW3236
periplasmic protein (SEC through IM), Putative amino-acid ABC transporter-binding YhdW
Periplasmic
G
Soluble IM Fraction
Periplasm
Cytoplasmic
 
 
SEC
 
 
no
no
YBHC_ECOLI
P46130
ybhC
b0772 JW0755
OM lipoprotein (SEC through IM), inserted in OM by LOL), Putative acyl-CoA thioester hydrolase YbhC
Outer Membrane Lipoprotein
I
Soluble IM Fraction
Cell outer membrane
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
CSGC_ECOLI
P52107
csgC
b1043 JW1026
periplasmic protein (SEC through IM), Curli assembly CsgC
Periplasmic
G
N/A
Periplasm
Periplasmic
 
 
SEC
 
 
no
yes
RZOD_ECOLI
P58041
rzoD
b4510 JW5080
OM lipoprotein (SEC through IM), inserted in OM by LOL), Prophage RzoD (o-spanin)
Outer Membrane Lipoprotein
I
N/A
Cell outer membrane
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
no
RZOR_ECOLI
P58042
rzoR
b4528 JW5213
OM lipoprotein (SEC through IM), inserted in OM by LOL), Prophage RzoR (o-spanin)
Outer Membrane Lipoprotein
I
N/A
Cell outer membrane
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
no
DPAL_ECOLI
P66899
ygeX
b2871 JW2839
cytoplasmic protein, Diaminopropionate ammonia-lyase YgeX
Cytoplasmic
A
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RCSF_ECOLI
P69411
rcsF
b0196 JW0192
OM lipoprotein (SEC through IM, inserted in OM by LOL), RcsF
Outer Membrane Lipoprotein
I
Soluble IM Fraction
Cell outer membrane
Outer membrane Lipoprotein (Experimental)
 
 
SEC
DSBA
LOL
yes
yes
YAHK_ECOLI
P75691
yahK
b0325 JW0317
cytoplasmic peripheral IM protein, Aldehyde reductase YahK
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
IM (predicted-detected)
 
Cytoplasmic
 
 
 
 
 
no
yes
YBGO_ECOLI
P75748
ybgO
b0716 JW5098
Fimbrial periplasmic protein (SEC through IM), YbgO
Periplasmic
G
N/A
 
Periplasmic
fimbriae
 
SEC
 
 
no
yes
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