STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RS3_ECOLI
P0A7V3
rpsC
b3314 JW3276
30S ribosomal protein S3
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
RS4_ECOLI
P0A7V8
rpsD

ramA

b3296 JW3258
30S ribosomal protein S4
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RS5_ECOLI
P0A7W1
rpsE

spc

b3303 JW3265
30S ribosomal protein S5
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RS6_ECOLI
P02358
rpsF
b4200 JW4158
30S ribosomal protein S6 [Cleaved into: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal protein S6, non-modified isoform]
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RS7_ECOLI
P02359
rpsG
b3341 JW3303
30S ribosomal protein S7
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RS8_ECOLI
P0A7W7
rpsH
b3306 JW3268
30S ribosomal protein S8
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RS9_ECOLI
P0A7X3
rpsI
b3230 JW3199
30S ribosomal protein S9
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HSLO_ECOLI
P0A6Y5
hslO

yrfI

b3401 JW5692
33 kDa chaperonin (Heat shock protein 33) (HSP33)
Peripheral inner membrane protein facing the cytoplasm
F1
Cytoplasm
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
ACPT_ECOLI
P37623
acpT

yhhU

b3475 JW3440
4'-phosphopantetheinyl transferase AcpT (EC 2.7.8.-)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ENTD_ECOLI
P19925
entD
b0583 JW5085
4'-phosphopantetheinyl transferase entD (EC 2.7.8.-) (Enterobactin synthase component D) (Enterochelin synthase D)
Cytoplasmic
A
 
Membrane anchored
N/A
 
 
 
 
 
yes
yes
MALQ_ECOLI
P15977
malQ

malA

b3416 JW3379
4-alpha-glucanotransferase (EC 2.4.1.25) (Amylomaltase) (Disproportionating enzyme) (D-enzyme)
Peripheral inner membrane protein facing the cytoplasm
F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
WECF_ECOLI
P56258
wecF

rffT yifM

b4481 JW5596
4-alpha-L-fucosyltransferase (EC 2.4.1.-) (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc transferase)
Peripheral inner membrane protein facing the cytoplasm
F1
Cell inner membrane | Peripheral membrane protein
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
GABT_ECOLI
P22256
gabT
b2662 JW2637
4-aminobutyrate aminotransferase (EC 2.6.1.19) ((S)-3-amino-2-methylpropionate transaminase) (EC 2.6.1.22) (GABA aminotransferase) (GABA-AT) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (Glutamate:succinic semialdehyde transaminase) (L-AIBAT)
Peripheral inner membrane protein facing the cytoplasm
F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
PUUE_ECOLI
P50457
puuE

goaG

b1302 JW1295
4-aminobutyrate aminotransferase (EC 2.6.1.19) (GABA aminotransferase) (GABA-AT) (Gamma-amino-N-butyrate transaminase) (GABA transaminase) (Glutamate:succinic semialdehyde transaminase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
KDUI_ECOLI
Q46938
kduI

yqeE

b2843 JW2811
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI isomerase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ISPE_ECOLI
P62615
ispE

ipk ychB

b1208 JW1199
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (EC 2.7.1.148) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HOA_ECOLI
P51020
mhpE
b0352 JW0343
4-hydroxy-2-oxovalerate aldolase (HOA) (EC 4.1.3.39) (4-hydroxy-2-keto-pentanoic acid aldolase) (4-hydroxy-2-oxopentanoate aldolase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
ISPG_ECOLI
P62620
ispG

gcpE

b2515 JW2499
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.7.1) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (Protein gcpE) (Protein E)
Peripheral inner membrane protein facing the cytoplasm
F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ISPH_ECOLI
P62623
ispH

lytB yaaE

b0029 JW0027
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
UBIA_ECOLI
P0AGK1
ubiA

cyr

b4040 JW4000
4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (4-HB polyprenyltransferase)
Integral Inner Membrane
B
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
IM (predicted)
 
SRP
SEC
 
 
yes
yes
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