STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RL4_ECOLI
P60723
rplD

eryA

b3319 JW3281
50S ribosomal protein L4
Ribosomal
r
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RL5_ECOLI
P62399
rplE
b3308 JW3270
50S ribosomal protein L5
Ribosomal
r
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RL6_ECOLI
P0AG55
rplF
b3305 JW3267
50S ribosomal protein L6
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RL7_ECOLI
P0A7K2
rplL
b3986 JW3949
50S ribosomal protein L7/L12 (L8)
Ribosomal
r
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
RL9_ECOLI
P0A7R1
rplI
b4203 JW4161
50S ribosomal protein L9
Ribosomal
r
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RISB_ECOLI
P61714
ribH

ribH ybaF

b0415 JW0405
6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine synthase) (EC 2.5.1.9) (Riboflavin synthase beta chain)
Peripheral inner membrane protein facing the cytoplasm
F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
QUED_ECOLI
P65870
queD

ygcM

b2765 JW2735
6-carboxy-5,6,7,8-tetrahydropterin synthase (CPH4 synthase) (EC 4.-.-.-) (Queuosine biosynthesis protein queD)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CHBF_ECOLI
P17411
chbF

celF ydjD

b1734 JW1723
6-phospho-beta-glucosidase (EC 3.2.1.86) (Cellobiose-6-phosphate hydrolase) (Phospho-chitobiase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ASCB_ECOLI
P24240
ascB
b2716 JW2686
6-phospho-beta-glucosidase AscB (EC 3.2.1.86)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
BGLA_ECOLI
Q46829
bglA

bglD yqfC

b2901 JW2869
6-phospho-beta-glucosidase BglA (EC 3.2.1.86)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
BGLB_ECOLI
P11988
bglB
b3721 JW3699
6-phospho-beta-glucosidase BglB (EC 3.2.1.86)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
K6PF1_ECOLI
P0A796
pfkA
b3916 JW3887
6-phosphofructokinase isozyme 1 (EC 2.7.1.11) (6-phosphofructokinase isozyme I) (Phosphofructokinase 1) (Phosphohexokinase 1)
Peripheral inner membrane protein facing the cytoplasm
F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
K6PF2_ECOLI
P06999
pfkB
b1723 JW5280
6-phosphofructokinase isozyme 2 (Phosphofructokinase-2) (EC 2.7.1.11)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
6PGD_ECOLI
P00350
gnd
b2029 JW2011
6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Peripheral inner membrane protein facing the cytoplasm
F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RCNR_ECOLI
P64530
rcnR

yohL

b2105 JW2092
6-phosphogluconolactonase (6-P-gluconolactonase) (Pgl) (EC 3.1.1.31)
Cytoplasmic
A
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CH60_ECOLI
P0A6F5
groL

groEL mopA

b4143 JW4103
60 kDa chaperonin (Protein Cpn60) (groEL protein)
Peripheral inner membrane protein facing the cytoplasm
F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
HDHA_ECOLI
P0AET8
hdhA

hsdH

b1619 JW1611
7-alpha-hydroxysteroid dehydrogenase (7-alpha-HSDH) (EC 1.1.1.159)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
QUEE_ECOLI
P64554
queE

ygcF

b2777 JW2748
7-carboxy-7-deazaguanine synthase homolog
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
QUEC_ECOLI
P77756
queC

ybaX

b0444 JW0434
7-cyano-7-deazaguanine synthase (EC 6.3.-.-) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein queC)
Cytoplasmic
A
 
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
BIOF_ECOLI
P12998
bioF
b0776 JW0759
8-amino-7-oxononanoate synthase (AONS) (EC 2.3.1.47) (7-keto-8-amino-pelargonic acid synthase) (7-KAP synthase) (KAPA synthase) (8-amino-7-ketopelargonate synthase) (L-alanine--pimeloyl-CoA ligase)
Cytoplasmic
A
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
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