STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
GYRB_ECOLI
P0AES6
gyrB

acrB cou himB hisU nalC parA pcbA

b3699 JW5625
cytoplasmic nucleoid peripheral IM protein, DNA gyrase subunit B GyrB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
DPO1_ECOLI
P00582
polA

resA

b3863 JW3835
cytoplasmic nucleoid peripheral IM protein, DNA polymerase I PolA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
DPS_ECOLI
P0ABT2
dps

pexB vtm

b0812 JW0797
cytoplasmic nucleoid peripheral IM protein, DNA protection during starvation Dps
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RADA_ECOLI
P24554
radA

sms

b4389 JW4352
cytoplasmic nucleoid peripheral IM protein, DNA repair RadA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RECF_ECOLI
P0A7H0
recF

uvrF

b3700 JW3677
cytoplasmic nucleoid peripheral IM protein, DNA replication and repair RecF
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
PARC_ECOLI
P0AFI2
parC
b3019 JW2987
cytoplasmic nucleoid peripheral IM protein, DNA topoisomerase 4 subunit A ParC
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cell membrane; Peripheral membrane protein
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
FIS_ECOLI
P0A6R3
fis
b3261 JW3229
cytoplasmic nucleoid peripheral IM protein, DNA-binding Fis
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HNS_ECOLI
P0ACF8
hns

bglY cur drdX hnsA msyA osmZ pilG topS

b1237 JW1225
cytoplasmic nucleoid peripheral IM protein, DNA-binding H-NS
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
DBHA_ECOLI
P0ACF0
hupA
b4000 JW3964
cytoplasmic nucleoid peripheral IM protein, DNA-binding HU-alpha HupA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
DBHB_ECOLI
P0ACF4
hupB

hopD

b0440 JW0430
cytoplasmic nucleoid peripheral IM protein, DNA-binding HU-beta HupB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
STPA_ECOLI
P0ACG1
stpA

hnsB

b2669 JW2644
cytoplasmic nucleoid peripheral IM protein, DNA-binding StpA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RPOA_ECOLI
P0A7Z4
rpoA

pez phs sez

b3295 JW3257
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit alpha RpoA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RPOB_ECOLI
P0A8V2
rpoB

groN nitB rif ron stl stv tabD

b3987 JW3950
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit beta RpoB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RPOC_ECOLI
P0A8T7
rpoC

tabB

b3988 JW3951
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit beta' RpoC
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RPOZ_ECOLI
P0A800
rpoZ
b3649 JW3624
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit omega RpoZ
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HDA_ECOLI
P69931
hda

idaB yfgE

b2496 JW5397
cytoplasmic nucleoid peripheral IM protein, DnaA regulatory inactivator Hda
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cell inner membrane
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RPOE_ECOLI
P0AGB6
rpoE

sigE

b2573 JW2557
cytoplasmic nucleoid peripheral IM protein, ECF RNA polymerase sigma-E factor RpoE
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
RNB_ECOLI
P30850
rnb
b1286 JW1279
cytoplasmic nucleoid peripheral IM protein, Exoribonuclease 2 Rnb
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CYSB_ECOLI
P0A9F3
cysB
b1275 JW1267
cytoplasmic nucleoid peripheral IM protein, HTH-type transcriptional regulator CysB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
MALT_ECOLI
P06993
malT

malA

b3418 JW3381
cytoplasmic nucleoid peripheral IM protein, HTH-type transcriptional regulator MalT
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
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