STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
MLRA_ECOLI
P33358
mlrA

yehV

b2127 JW2115
cytoplasmic nucleoid peripheral IM protein, HTH-type transcriptional regulator MlrA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
IHFA_ECOLI
P0A6X7
ihfA

hid himA

b1712 JW1702
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit alpha IhfA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm; nucleoid
Cytoplasmic
N/A
 
 
 
 
 
no
yes
IHFB_ECOLI
P0A6Y1
ihfB

himD hip

b0912 JW0895
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit beta IhfB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
no
yes
LRP_ECOLI
P0ACJ0
lrp

alsB ihb livR oppI

b0889 JW0872
cytoplasmic nucleoid peripheral IM protein, Leucine-responsive regulatory protein Lrp
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
MATP_ECOLI
P0A8N0
matP

ycbG

b0956 JW0939
cytoplasmic nucleoid peripheral IM protein, Macrodomain Ter protein MatP
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N/A
 
 
 
 
 
yes
yes
MLC_ECOLI
P50456
mlc
b1594 JW1586
cytoplasmic nucleoid peripheral IM protein, Mlc
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
IM (predicted)
 
 
 
 
 
yes
yes
YBBO_ECOLI
P0AFP4
ybbO
b0493 JW0482
cytoplasmic nucleoid peripheral IM protein, Oxidoreductase YbbO
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
no
yes
PHOB_ECOLI
P0AFJ5
phoB
b0399 JW0389
cytoplasmic nucleoid peripheral IM protein, Phosphate regulon transcriptional regulatory PhoB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
FECI_ECOLI
P23484
fecI
b4293 JW4253
cytoplasmic nucleoid peripheral IM protein, Probable RNA polymerase sigma factor FecI
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
RRAA_ECOLI
P0A8R0
rraA

menG yiiV

b3929 JW3900
cytoplasmic nucleoid peripheral IM protein, Regulator of ribonuclease activity A RraA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
no
yes
RRAB_ECOLI
P0AF90
rraB

yjgD

b4255 JW4212
cytoplasmic nucleoid peripheral IM protein, Regulator of ribonuclease activity B RraB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
DNAB_ECOLI
P0ACB0
dnaB

groP grpA

b4052 JW4012
cytoplasmic nucleoid peripheral IM protein, Replicative DNA helicase DnaB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RNC_ECOLI
P0A7Y0
rnc
b2567 JW2551
cytoplasmic nucleoid peripheral IM protein, Ribonuclease 3 Rnc
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RPOD_ECOLI
P00579
rpoD

alt

b3067 JW3039
cytoplasmic nucleoid peripheral IM protein, RNA polymerase sigma factor RpoD
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RPOS_ECOLI
P13445
rpoS

appR katF nur otsX sigS

b2741 JW5437
cytoplasmic nucleoid peripheral IM protein, RNA polymerase sigma factor RpoS
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
no
yes
RPPH_ECOLI
P0A776
rppH

nudH ygdP

b2830 JW2798
cytoplasmic nucleoid peripheral IM protein, RNA pyrophosphohydrolase RppH
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
HFQ_ECOLI
P0A6X3
hfq
b4172 JW4130
cytoplasmic nucleoid peripheral IM protein, RNA-binding Hfq
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
NUSA_ECOLI
P0AFF6
nusA
b3169 JW3138
cytoplasmic nucleoid peripheral IM protein, Transcription termination/antitermination NusA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CPXR_ECOLI
P0AE88
cpxR

yiiA

b3912 JW3883
cytoplasmic nucleoid peripheral IM protein, transcriptional regulator CpxR
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
OMPR_ECOLI
P0AA16
ompR

kmt ompB

b3405 JW3368
cytoplasmic nucleoid peripheral IM protein, transcriptional regulator OmpR
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cytoplasm
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
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