STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RCSB_ECOLI
P0DMC7
rcsB
b2217 JW2205
cytoplasmic nucleoid peripheral IM protein, transcriptional regulator RcsB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
 
Cytoplasmic
N/A
 
 
 
 
 
no
yes
NADR_ECOLI
P27278
nadR

nadI

b4390 JW5800
cytoplasmic nucleoid peripheral IM protein, Trifunctional NAD biosynthesis/regulator NadR
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Cell membrane; Peripheral membrane protein Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
AMPH_ECOLI
P0AD70
ampH

yaiH

b0376 JW5052
cytoplasmic peripheral IM protein (SEC through IM), D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane
Periplasmic
N/A
 
 
 
SurA
 
yes
yes
AEEP_ECOLI
P51981
ycjG

ycjH

b1325 JW1318
cytoplasmic peripheral IM protein (SEC through IM), L-Ala-D/L-Glu epimerase YcjG
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
IM (predicted-detected)
 
 
 
 
 
yes
yes
ENO_ECOLI
P0A6P9
eno
b2779 JW2750
cytoplasmic peripheral IM protein facing the cytoplasm & peripheral OM protein facing the extra-cellular space (SEC through IM), Enolase Eno
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, Peripheral outer membrane protein facing the extra-cellular space
A, F1, F4
Cytoplasm; cytoskeleton Secreted Cell surface
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
 
 
SEC
 
 
yes
yes
DNAK_ECOLI
P0A6Y8
dnaK

groP grpF seg

b0014 JW0013
cytoplasmic peripheral IM protein of Hsp70 family, Chaperone DnaK
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
LOLD_ECOLI
P75957
lolD

ycfV

b1117 JW5162
cytoplasmic peripheral IM protein, -releasing system ATP-binding LolD
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane; Peripheral membrane protein
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
yes
yes
PAAC_ECOLI
P76079
paaC

ydbP

b1390 JW1385
cytoplasmic peripheral IM protein, 1,2-phenylacetyl-CoA epoxidase, subunit C PaaC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
 
 
 
 
no
yes
DXS_ECOLI
P77488
dxs

yajP

b0420 JW0410
cytoplasmic peripheral IM protein, 1-deoxy-D-xylulose-5-phosphate synthase Dxs
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CH10_ECOLI
P0A6F9
groS

groES mopB

b4142 JW4102
cytoplasmic peripheral IM protein, 10 kDa chaperonin GroS
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
no
yes
DAPD_ECOLI
P0A9D8
dapD
b0166 JW0161
cytoplasmic peripheral IM protein, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase DapD
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
GPMA_ECOLI
P62707
gpmA

gpm pgm pgmA

b0755 JW0738
cytoplasmic peripheral IM protein, 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase GpmA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
KBL_ECOLI
P0AB77
kbl
b3617 JW3592
cytoplasmic peripheral IM protein, 2-amino-3-ketobutyrate coenzyme A ligase Kbl
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
RIDA_ECOLI
P0AF93
ridA

yjgF

b4243 JW5755
cytoplasmic peripheral IM protein, 2-iminobutanoate/2-iminopropanoate deaminase RidA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
UBIH_ECOLI
P25534
ubiH

visB

b2907 JW2875
cytoplasmic peripheral IM protein, 2-octaprenyl-6-methoxyphenol hydroxylase UbiH
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ODO1_ECOLI
P0AFG3
sucA
b0726 JW0715
cytoplasmic peripheral IM protein, 2-oxoglutarate dehydrogenase E1 component SucA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
 
TF
 
 
 
yes
yes
MENE_ECOLI
P37353
menE
b2260 JW2255
cytoplasmic peripheral IM protein, 2-succinylbenzoate--CoA ligase MenE
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RLUF_ECOLI
P32684
rluF

yjbC

b4022 JW3982
cytoplasmic peripheral IM protein, 23S rRNA pseudouridine(2604) synthase RluF
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
CYSQ_ECOLI
P22255
cysQ

amtA

b4214 JW4172
cytoplasmic peripheral IM protein, 3'(2'),5'-bisphosphate nucleotidase CysQ
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell inner membrane
Membrane associated (Experimental)
N/A
 
 
 
 
 
no
yes
RIBB_ECOLI
P0A7J0
ribB

htrP

b3041 JW3009
cytoplasmic peripheral IM protein, 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm
A, F1
Cell membrane
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
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