STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E. coli K-12 / MG1655/ ATCC 47076 proteome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E. coli K-12 / MG1655/ ATCC 47076 proteome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YJGA_ECOLI
P0A8X0
yjgA
b4234 JW4193
cytoplasmic peripheral IM protein, UPF0307 YjgA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
DER_ECOLI
P0A6P5
der

engA yfgK

b2511 JW5403
ribosomal cytoplasmic peripheral IM protein, GTPase Der
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
 
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
ERA_ECOLI
P06616
era

rbaA sdgE

b2566 JW2550
ribosomal cytoplasmic peripheral IM protein, GTPase Era
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RIMM_ECOLI
P0A7X6
rimM

yfjA

b2608 JW5413
ribosomal cytoplasmic peripheral IM protein, Ribosome maturation factor RimM
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
 
 
 
 
 
yes
yes
RSGA_ECOLI
P39286
rsgA

engC yjeQ

b4161 JW4122
ribosomal cytoplasmic peripheral IM protein, Small ribosomal subunit biogenesis GTPase RsgA
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
IF2_ECOLI
P0A705
infB

gicD ssyG

b3168 JW3137
ribosomal cytoplasmic peripheral IM protein, Translation initiation factor IF-2 InfB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
yes
yes
IF3_ECOLI
P0A707
infC

fit srjA

b1718 JW5829
ribosomal cytoplasmic peripheral IM protein, Translation initiation factor IF-3 InfC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
Cytoplasm
Cytoplasmic
N/A
 
TF
 
 
 
no
yes
RS1_ECOLI
P0AG67
rpsA

ssyF

b0911 JW0894
ribosomal protein, 30S S1 RpsA
Cytoplasmic, Ribosomal
A, r
Cytoplasm
Cytoplasmic (Experimental)
Soluble protein detected in Inner Membrane Fraction
ribosome
 
 
 
 
yes
yes
RS10_ECOLI
P0A7R5
rpsJ

nusE

b3321 JW3283
ribosomal protein, 30S S10 RpsJ
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS11_ECOLI
P0A7R9
rpsK
b3297 JW3259
ribosomal protein, 30S S11 RpsK
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS12_ECOLI
P0A7S3
rpsL

strA

b3342 JW3304
ribosomal protein, 30S S12 RpsL
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
ribosome
 
 
 
 
no
yes
RS13_ECOLI
P0A7S9
rpsM
b3298 JW3260
ribosomal protein, 30S S13 RpsM
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS14_ECOLI
P0AG59
rpsN
b3307 JW3269
ribosomal protein, 30S S14 RpsN
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS15_ECOLI
P0ADZ4
rpsO

secC

b3165 JW3134
ribosomal protein, 30S S15 RpsO
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS16_ECOLI
P0A7T3
rpsP
b2609 JW2590
ribosomal protein, 30S S16 RpsP
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS17_ECOLI
P0AG63
rpsQ

neaA

b3311 JW3273
ribosomal protein, 30S S17 RpsQ
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
yes
yes
RS18_ECOLI
P0A7T7
rpsR
b4202 JW4160
ribosomal protein, 30S S18 RpsR
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
no
yes
RS19_ECOLI
P0A7U3
rpsS
b3316 JW3278
ribosomal protein, 30S S19 RpsS
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
no
yes
RS2_ECOLI
P0A7V0
rpsB
b0169 JW0164
ribosomal protein, 30S S2 RpsB
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
Soluble protein detected in Inner Membrane Fraction
ribosome
 
 
 
 
yes
yes
RS20_ECOLI
P0A7U7
rpsT
b0023 JW0022
ribosomal protein, 30S S20 RpsT
Cytoplasmic, Ribosomal
A, r
 
Cytoplasmic
N/A
ribosome
 
 
 
 
no
yes
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