STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Sequences of Sec exported proteins in E.coli K-12 (MG1655)  Export to Excel  Export to CSV  

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Sequences of Sec exported proteins in E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Full Name
ID
Uniprot
Export System
Prediction
Tool
Prediction
Score
Evidence of Signal Peptide
(Experimental/Predicted)
References
Signal Peptide /
Mature Domain
FEPA_ECOLI
P05825
fepA
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
SignalP3
01.000
Predicted
 
MNKKIHSLAL LVNLGIYGVA QA

QEPTDTPVSH DDTIVVTAAE QNLQAPGVST ITADEIRKNP VARDVSKIIR TMPGVNLTGN ... see all
BTUB_ECOLI
P06129
btuB
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
SignalP4
00.828
Experimental
MIKKASLLTA CSVTAFSAWA

QDTSPDTLVV TANRFEQPRS TVLAPTTVVT RQDIDRWQST SVNDVLRRLP GVDITQNGGS ... see all
CDH_ECOLI
P06282
cdh
Periplasmic
G
Cell inner membrane | Single-pass membrane protein
SEC
Phobius
 
Predicted
 
MKKAGLLFLV MIVIAVVAA

GIGYWKLTGE ESDTLRKIVL EECLPNQQQN QNPSPCAEVK PNAGYVVLKD LNGPLQYLLM ... see all
FHUA_ECOLI
P06971
fhuA
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
SignalP3
01.000
experimental
MARSKTAQPK HSLRKIAVVV ATAVSGMSVY AQA

AVEPKEDTIT VTAAPAPQES AWGPAATIAA RQSATGTKTD TPIQKVPQSI SVVTAEEMAL ... see all
OMPC_ECOLI
P06996
ompC
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
SignalP4
00.884
Experimental
MKVKVLSLLV PALLVAGAAN A

AEVYNKDGNK LDLYGKVDGL HYFSDNKDVD GDQTYMRLGF KGETQVTDQL TGYGQWEYQI ... see all
YFIB_ECOLI
P07021
yfiB
Outer Membrane Lipoprotein
I
Cell membrane | Lipid-anchor
SEC
LipoP
18.876
Predicted
 
MIKHLVAPLV FTSLILTG

CQSPQGKFTP EQVAAMQSYG FTESAGDWSL GLSDAILFAK NDYKLLPESQ QQIQTMAAKL ... see all
USHA_ECOLI
P07024
ushA
Periplasmic
G
Periplasm
SEC
SignalP4.1
01.000
experimental
MKLLQRGVAL ALLTTFTLAS ETALA

YEQDKTYKIT VLHTNDHHGH FWRNEYGEYG LAAQKTLVDG IRKEVAAEGG SVLLLSGGDI ... see all
PPA_ECOLI
P07102
appA
Periplasmic
G
Periplasm
SEC
SignalP4.1
01.000
experimental
MKAILIPFLS LLIPLTPQSA FA

QSEPELKLES VVIVSRHGVR APTKATQLMQ DVTPDAWPTW PVKLGWLTPR GGELIAYLGH ... see all
FIMF_ECOLI
P08189
fimF
Peripheral outer membrane protein facing the extra-cellular space
F4
Fimbrium
SEC
SignalP4.1
00.871
Predicted
 
MRNKPFYLLC AFLWLAVSHA LA

ADSTITIRGY VRDNGCSVAA ESTNFTVDLM ENAAKQFNNI GATTPVVPFR ILLSPCGNAV ... see all
FIMG_ECOLI
P08190
fimG
Peripheral outer membrane protein facing the extra-cellular space
F4
Fimbrium
SEC
SignalP4.1
00.773
Predicted
 
MKWCKRGYVL AAILALASAT IQA

ADVTITVNGK VVAKPCTVST TNATVDLGDL YSFSLMSAGA ASAWHDVALE LTNCPVGTSR ... see all
FIMH_ECOLI
P08191
fimH
Peripheral outer membrane protein facing the extra-cellular space
F4
Fimbrium
SEC
SignalP4.1
00.539
Experimental
MKRVITLFAV LLMGWSVNAW S

FACKTANGTA IPIGGGSANV YVNLAPVVNV GQNLVVDLST QIFCHNDYPE TITDYVTLQR ... see all
CPDB_ECOLI
P08331
cpdB
Periplasmic
G
Periplasm
SEC
SignalP4.1
 
Experimental
MIKFSATLLA TLIAASVNA

ATVDLRIMET TDLHSNMMDF DYYKDTATEK FGLVRTASLI NDARNEVKNS VLVDNGDLIQ ... see all
YGDB_ECOLI
P08370
ygdB
Periplasmic
G
 
SEC
LipoP
00.998
Predicted
 
MNREKGVSSL ALVLMLLVLG SLLLQG

MSQQDRSFAS RVSMESQSLR RQAIVQSALA WGKMHCWQTQ PAVQCSQYAE TDAQVCLRLL ... see all
DACC_ECOLI
P08506
dacC
Peripheral inner membrane protein facing the periplasm
F2
Cell inner membrane | Peripheral membrane protein
SEC
SignalP4.1
00.887
Experimental
MTQYSSLLRG LAAGSAFLFL FAPTAFA

AEQTVEAPSV DARAWILMDY ASGKVLAEGN ADEKLDPASL TKIMTSYVVG QALKADKIKL ... see all
OMPT_ECOLI
P09169
ompT
Outer Membrane b-barrel protein
H
Cell outer membrane | Multi-pass membrane protein
SEC
SignalP3
00.999
experimental
MRAKLLGIVL TTPIAISSFA

STETLSFTPD NINADISLGT LSGKTKERVY LAEEGGRKVS QLDWKFNNAA IIKGAINWDL ... see all
GLPQ_ECOLI
P09394
glpQ
Periplasmic
G
Periplasm
SEC
SignalP4.1
01.000
experimental
MKLTLKNLSM AIMMSTIVMG SSAMA

ADSNEKIVIA HRGASGYLPE HTLPAKAMAY AQGADYLEQD LVMTKDDNLV VLHDHYLDRV ... see all
ARGT_ECOLI
P09551
argT
Periplasmic
G
Periplasm
SEC
SignalP4.1
01.000
Experimental
MKKSILALSL LVGLSTAASS YA

ALPETVRIGT DTTYAPFSSK DAKGDFVGFD IDLGNEMCKR MQVKCTWVAS DFDALIPSLK ... see all
FLGH_ECOLI
P0A6S0
flgH
Outer Membrane Lipoprotein
I
Cell outer membrane | Lipid-anchorBacterial flagellum basal body
SEC
LipoP
17.071
Predicted
 
MQKNAAHTYA ISSLLVLSLT G

CAWIPSTPLV QGATSAQPVP GPTPVANGSI FQSAQPINYG YQPLFEDRRP RNIGDTLTIV ... see all
FLGI_ECOLI
P0A6S3
flgI
Periplasmic
G
PeriplasmBacterial flagellum basal body
 
SignalP4.1
01.000
Predicted
 
MIKFLSALIL LLVTTAAQAE

RIRDLTSVQG VRQNSLIGYG LVVGLDGTGD QTTQTPFTTQ TLNNMLSQLG ITVPTGTNMQ ... see all
TOLB_ECOLI
P0A855
tolB
Periplasmic
G
Periplasm
SEC
LipoP
00.996
experimental
MKQALRVAFG FLILWASVLH A

EVRIVIDSGV DSGRPIGVVP FQWAGPGAAP EDIGGIVAAD LRNSGKFNPL DRARLPQQPG ... see all
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