STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies


Pubmed ID
First Author
Year
Publication Title
Relevant Protein
Shiomi D, Margolin W
Mol Microbiol. 2008 Feb;67(3):558-69. doi: 10.1111/j.1365-2958.2007.06085.x.
Compensation for the loss of the conserved membrane targeting sequence of FtsA provides new insights into its function.
Weiche B, Burk J, Angelini S, Schiltz E, Thumfart JO, Koch HG
J Mol Biol. 2008 Mar 28;377(3):761-73. doi: 10.1016/j.jmb.2008.01.040. Epub 2008 Jan 26.
A cleavable N-terminal membrane anchor is involved in membrane binding of the Escherichia coli SRP receptor.
Ito K
Curr Opin Struct Biol. 2008 Aug;18(4):450-8. doi: 10.1016/j.sbi.2008.02.002. Epub
The disulfide bond formation (Dsb) system.
Futai M, Kimura H
J Biol Chem. 1977 Aug 25;252(16):5820-7.
Inducible membrane-bound L-lactate dehydrogenase from Escherichia coli. Purification and properties.
Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, Ocampo A, Rudd KE, Storz G
Mol Microbiol. 2008 Dec;70(5):1076-93. doi: 10.1111/j.1365-2958.2008.06394.x. Epub 2008 Aug 14.
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs.
Hengge R
Adv Exp Med Biol. 2008;631:40-53. doi: 10.1007/978-0-387-78885-2_4.
The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli.
Khemici V, Poljak L, Luisi BF, Carpousis AJ
Mol Microbiol. 2008 Nov;70(4):799-813. doi: 10.1111/j.1365-2958.2008.06454.x. Epub 2008 Oct 2.
The RNase E of Escherichia coli is a membrane-binding protein.
Neumann P, Weidner A, Pech A, Stubbs MT, Tittmann K
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17390-5. doi: 10.1073/pnas.0805027105. Epub 2008 Nov 6.
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.
Shiomi D, Sakai M, Niki H
EMBO J. 2008 Dec 3;27(23):3081-91. doi: 10.1038/emboj.2008.234. Epub 2008 Nov 13.
Determination of bacterial rod shape by a novel cytoskeletal membrane protein.
Bendezu FO, Hale CA, Bernhardt TG, de Boer PA
EMBO J. 2009 Feb 4;28(3):193-204. doi: 10.1038/emboj.2008.264. Epub 2008 Dec 11.
RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli.
Heermann R, Weber A, Mayer B, Ott M, Hauser E, Gabriel G, Pirch T, Jung K
J Mol Biol. 2009 Feb 13;386(1):134-48. doi: 10.1016/j.jmb.2008.12.007. Epub 2008 Dec 11.
The universal stress protein UspC scaffolds the KdpD/KdpE signaling cascade of Escherichia coli under salt stress.
Hemm MR, Paul BJ, Schneider TD, Storz G, Rudd KE
Mol Microbiol. 2008 Dec;70(6):1487-501. doi: 10.1111/j.1365-2958.2008.06495.x.
Small membrane proteins found by comparative genomics and ribosome binding site models.
Nenninger AA, Robinson LS, Hultgren SJ
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):900-5. doi: 10.1073/pnas.0812143106
Localized and efficient curli nucleation requires the chaperone-like amyloid assembly protein CsgF.
Dalal K, Nguyen N, Alami M, Tan J, Moraes TF, Lee WC, Maurus R, Sligar SS, Brayer GD, Duong F
J Biol Chem. 2009 Mar 20;284(12):7897-902. doi: 10.1074/jbc.M808305200. Epub 2009 Jan 12.
Structure, binding, and activity of Syd, a SecY-interacting protein.
Mitchell KA, Szabo G, de S Otero A
Biochim Biophys Acta. 2009 Mar;1793(3):469-76. doi: 10.1016/j.bbamcr.2008.12.009. Epub 2008 Dec 25.
Direct binding of cytosolic NDP kinases to membrane lipids is regulated by nucleotides.
Yum S, Xu Y, Piao S, Sim SH, Kim HM, Jo WS, Kim KJ, Kweon HS, Jeong MH, Jeon H, Lee K, Ha NC
J Mol Biol. 2009 Apr 17;387(5):1286-97. doi: 10.1016/j.jmb.2009.02.048. Epub 2009 Feb 28.
Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump.
Prieto AI, Hernandez SB, Cota I, Pucciarelli MG, Orlov Y, Ramos-Morales F, Garcia-del Portillo F, Casadesus J
J Bacteriol. 2009 Jun;191(11):3615-22. doi: 10.1128/JB.01592-08. Epub 2009 Apr 3.
Roles of the outer membrane protein AsmA of Salmonella enterica in the control of marRAB expression and invasion of epithelial cells.
Gupta V, Sendra M, Naik SG, Chahal HK, Huynh BH, Outten FW, Fontecave M, Ollagnier de Choudens S
J Am Chem Soc. 2009 May 6;131(17):6149-53. doi: 10.1021/ja807551e.
Native Escherichia coli SufA, coexpressed with SufBCDSE, purifies as a [2Fe-2S] protein and acts as an Fe-S transporter to Fe-S target enzymes.
Neumann M, Mittelstadt G, Iobbi-Nivol C, Saggu M, Lendzian F, Hildebrandt P, Leimkuhler S
FEBS J. 2009 May;276(10):2762-74. doi: 10.1111/j.1742-4658.2009.07000.x. Epub 2009 Apr 1.
A periplasmic aldehyde oxidoreductase represents the first molybdopterin cytosine dinucleotide cofactor containing molybdo-flavoenzyme from Escherichia coli.
Arends SJ, Williams K, Scott RJ, Rolong S, Popham DL, Weiss DS
J Bacteriol. 2010 Jan;192(1):242-55. doi: 10.1128/JB.01244-09
Discovery and characterization of three new Escherichia coli septal ring proteins that contain a SPOR domain: DamX, DedD, and RlpA.
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