STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Metzger LE 4th, Raetz CR.
Biochemistry. 2009
Purification and characterization of the lipid A disaccharide synthase (LpxB) from Escherichia coli, a peripheral membrane protein.
Diestra E, Cayrol B, Arluison V, Risco C
PLoS One. 2009 Dec 14;4(12):e8301. doi: 10.1371/journal.pone.0008301.
Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane.
Hsieh CW, Lin TY, Lai HM, Lin CC, Hsieh TS, Shih YL
Mol Microbiol. 2010 Jan;75(2):499-512. doi: 10.1111/j.1365-2958.2009.07006.x. Epub 2009 Dec 16.
Direct MinE-membrane interaction contributes to the proper localization of MinDE in E. coli.
Defeu Soufo HJ, Reimold C, Linne U, Knust T, Gescher J, Graumann PL
Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):3163-8. doi: 10.1073/pnas.0911979107. Epub 2010 Jan 28.
Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein.
van den Ent F, Johnson CM, Persons L, de Boer P, Lowe J
EMBO J. 2010 Mar 17;29(6):1081-90. doi: 10.1038/emboj.2010.9. Epub 2010 Feb 18.
Bacterial actin MreB assembles in complex with cell shape protein RodZ.
Hwang J, Inouye M
J Bacteriol. 2010 Apr;192(8):2277-83. doi: 10.1128/JB.00045-10. Epub 2010 Feb 19.
Interaction of an essential Escherichia coli GTPase, Der, with the 50S ribosome via the KH-like domain.
O'Daniel PI, Zajicek J, Zhang W, Shi Q, Fisher JF, Mobashery S
J Am Chem Soc. 2010 Mar 31;132(12):4110-8. doi: 10.1021/ja9094445.
Elucidation of the structure of the membrane anchor of penicillin-binding protein 5 of Escherichia coli.
Korea CG, Badouraly R, Prevost MC, Ghigo JM, Beloin C
Environ Microbiol. 2010 Jul;12(7):1957-77. doi: 10.1111/j.1462-2920.2010.02202.x. Epub 2010 Mar 23.
Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities.
Paul K, Nieto V, Carlquist WC, Blair DF, Harshey RM
Mol Cell. 2010 Apr 9;38(1):128-39. doi: 10.1016/j.molcel.2010.03.001. Epub 2010 Mar 25.
The c-di-GMP binding protein YcgR controls flagellar motor direction and speed to affect chemotaxis by a "backstop brake" mechanism.
Galli E, Gerdes K
Mol Microbiol. 2010 Jun;76(6):1514-26. doi: 10.1111/j.1365-2958.2010.07183.x. Epub 2010 May 11.
Spatial resolution of two bacterial cell division proteins: ZapA recruits ZapB to the inner face of the Z-ring.
Alexeeva S, Gadella TW Jr, Verheul J, Verhoeven GS, den Blaauwen T
Mol Microbiol. 2010 Jul;77(2):384-98. doi: 10.1111/j.1365-2958.2010.07211.x
Direct interactions of early and late assembling division proteins in Escherichia coli cells resolved by FRET.
Ludwig A, Völkerink G, von Rhein C, Bauer S, Maier E, Bergmann B, Goebel W, Benz R
J Bacteriol. 2010 Aug;192(15):4001-11. doi: 10.1128/JB.01283-09
Mutations affecting export and activity of cytolysin A from Escherichia coli.
Dhamdhere G, Zgurskaya HI
Mol Microbiol. 2010 Aug;77(3):743-54. doi: 10.1111/j.1365-2958.2010.07245.x. Epub 2010 Jun 1.
Metabolic shutdown in Escherichia coli cells lacking the outer membrane channel TolC.
Potluri L, Karczmarek A, Verheul J, Piette A, Wilkin JM, Werth N, Banzhaf M, Vollmer W, Young KD, Nguyen-Disteche M, den Blaauwen T
Mol Microbiol. 2010 Jul;77(2):300-23. doi: 10.1111/j.1365-2958.2010.07205.x. Epub 2010 Jun 7.
Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment.
Metzger LE 4th, Raetz CR
Biochemistry. 2010 Aug 10;49(31):6715-26. doi: 10.1021/bi1008744.
An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis.
Ingerson-Mahar M, Briegel A, Werner JN, Jensen GJ, Gitai Z
Nat Cell Biol. 2010 Aug;12(8):739-46. doi: 10.1038/ncb2087. Epub 2010 Jul 18.
The metabolic enzyme CTP synthase forms cytoskeletal filaments.
Fraipont C, Alexeeva S, Wolf B, van der Ploeg R, Schloesser M, den Blaauwen T, Nguyen-Distèche M
Microbiology. 2011 Jan;157(Pt 1):251-9. doi: 10.1099/mic.0.040071-0
The integral membrane FtsW protein and peptidoglycan synthase PBP3 form a subcomplex in Escherichia coli.
Ogasawara H, Yamamoto K, Ishihama A
FEMS Microbiol Lett. 2010 Nov;312(2):160-8. doi: 10.1111/j.1574-6968.2010.02112.x. Epub 2010 Sep 27.
Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli.
Li Y, Stewart NK, Berger AJ, Vos S, Schoeffler AJ, Berger JM, Chait BT, Oakley MG
Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18832-7. doi: 10.1073/pnas.1008678107. Epub 2010 Oct 4.
Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.
Thein M, Sauer G, Paramasivam N, Grin I, Linke D.
J Proteome Res. 2010
Efficient subfractionation of gram-negative bacteria for proteomics studies.
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