STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies


Pubmed ID
First Author
Year
Publication Title
Relevant Protein
Villegas JM, Volentini SI, Rintoul MR, Rapisarda VA
Arch Biochem Biophys. 2011 Jan 15;505(2):155-9. doi: 10.1016/j.abb.2010.10.001. Epub 2010 Oct 8.
Amphipathic C-terminal region of Escherichia coli NADH dehydrogenase-2 mediates membrane localization.
Pech M, Karim Z, Yamamoto H, Kitakawa M, Qin Y, Nierhaus KH
Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3199-203. doi: 10.1073/pnas.1012994108. Epub 2011 Feb 7.
Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations.
Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W, Cho HS, Chang I, Lee K, Ha NC
J Biol Chem. 2011 Apr 15;286(15):13541-9. doi: 10.1074/jbc.M110.202598. Epub 2011 Feb 16.
Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC.
Lee R, Aung-Htut MT, Kwik C, March PE
Protein Expr Purif. 2011 Jul;78(1):102-12. doi: 10.1016/j.pep.2011.02.009. Epub 2011 Feb 24.
Expression phenotypes suggest that Der participates in a specific, high affinity interaction with membranes.
Celis RT
J Biol Chem. 1990 Jan 25;265(3):1787-93.
Mutant of Escherichia coli K-12 with defective phosphorylation of two periplasmic transport proteins.
Strozen TG, Stanley H, Gu Y, Boyd J, Bagdasarian M, Sandkvist M, Howard SP
J Bacteriol. 2011 May;193(9):2322-31. doi: 10.1128/JB.01413-10. Epub 2011 Mar 4.
Involvement of the GspAB complex in assembly of the type II secretion system secretin of Aeromonas and Vibrio species.
Minami N, Yasuda T, Ishii Y, Fujimori K, Amano F
J Biochem. 2011 May;149(5):519-27. doi: 10.1093/jb/mvr036. Epub 2011 Mar 23.
Regulatory role of cardiolipin in the activity of an ATP-dependent protease, Lon, from Escherichia coli.
Shajani Z, Sykes MT, Williamson JR
Annu Rev Biochem. 2011;80:501-26. doi: 10.1146/annurev-biochem-062608-160432.
Assembly of bacterial ribosomes.
Ohniwa RL, Ushijima Y, Saito S, Morikawa K
PLoS One. 2011 Apr 26;6(4):e19172. doi: 10.1371/journal.pone.0019172.
Proteomic analyses of nucleoid-associated proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus.
Nenninger AA, Robinson LS, Hammer ND, Epstein EA, Badtke MP, Hultgren SJ, Chapman MR
Mol Microbiol. 2011 Jul;81(2):486-99. doi: 10.1111/j.1365-2958.2011.07706.x. Epub 2011 Jun 7.
CsgE is a curli secretion specificity factor that prevents amyloid fibre aggregation.
Hartl FU, Lecker S, Schiebel E, Hendrick JP, Wickner W
Cell. 1990 Oct 19;63(2):269-79.
The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane.
Salje J, van den Ent F, de Boer P, Lowe J
Mol Cell. 2011 Aug 5;43(3):478-87. doi: 10.1016/j.molcel.2011.07.008.
Direct membrane binding by bacterial actin MreB.
Krehenbrink M, Edwards A, Downie JA
Mol Microbiol. 2011 Oct;82(1):164-79. doi: 10.1111/j.1365-2958.2011.07803.x. Epub 2011 Sep 8.
The superoxide dismutase SodA is targeted to the periplasm in a SecA-dependent manner by a novel mechanism.
Sanchez-Romero MA, Lee DJ, Sanchez-Moran E, Busby SJ
Biochem J. 2012 Jan 1;441(1):481-5. doi: 10.1042/BJ20111258.
Location and dynamics of an active promoter in Escherichia coli K-12.
Phoenix DA, Pratt JM
Eur J Biochem. 1990 Jun 20;190(2):365-9.
pH-induced insertion of the amphiphilic alpha-helical anchor of Escherichia coli penicillin-binding protein 5.
Minamino T, Kinoshita M, Hara N, Takeuchi S, Hida A, Koya S, Glenwright H, Imada K, Aldridge PD, Namba K
Mol Microbiol. 2012 Feb;83(4):775-88. doi: 10.1111/j.1365-2958.2011.07964.x. Epub 2012 Jan 11.
Interaction of a bacterial flagellar chaperone FlgN with FlhA is required for efficient export of its cognate substrates.
Andersson CS, Lundgren CA, Magnusdottir A, Ge C, Wieslander A, Martinez Molina D, Hogbom M
Structure. 2012 Jun 6;20(6):1062-70. doi: 10.1016/j.str.2012.03.012. Epub 2012 May 3.
The Mycobacterium tuberculosis very-long-chain fatty acyl-CoA synthetase: structural basis for housing lipid substrates longer than the enzyme.
Yoshida H, Maki Y, Furuike S, Sakai A, Ueta M, Wada A
J Bacteriol. 2012 Aug;194(16):4178-83. doi: 10.1128/JB.00396-12. Epub 2012 Jun 1.
YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli.
Rothe FM, Bahr T, Stülke J, Rak B, Görke B
Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15906-11
Activation of Escherichia coli antiterminator BglG requires its phosphorylation.
Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS
Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e
Nuclear magnetic resonance solution structure of the peptidoglycan-binding SPOR domain from Escherichia coli DamX: insights into septal localization.
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