STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Cipolla L, Polissi A, Airoldi C, Galliani P, Sperandeo P, Nicotra F
Curr Drug Discov Technol. 2009 Mar;6(1):19-33.
The Kdo biosynthetic pathway toward OM biogenesis as target in antibacterial drug design and development.
Vertommen D, Ruiz N, Leverrier P, Silhavy TJ, Collet JF
Proteomics. 2009 May;9(9):2432-43. doi: 10.1002/pmic.200800794.
Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics.
Prieto AI, Hernandez SB, Cota I, Pucciarelli MG, Orlov Y, Ramos-Morales F, Garcia-del Portillo F, Casadesus J
J Bacteriol. 2009 Jun;191(11):3615-22. doi: 10.1128/JB.01592-08. Epub 2009 Apr 3.
Roles of the outer membrane protein AsmA of Salmonella enterica in the control of marRAB expression and invasion of epithelial cells.
Hizukuri Y, Morton JF, Yakushi T, Kojima S, Homma M
J Biochem. 2009 Aug;146(2):219-29. doi: 10.1093/jb/mvp061
The peptidoglycan-binding (PGB) domain of the Escherichia coli pal protein can also function as the PGB domain in E. coli flagellar motor protein MotB.
Gupta V, Sendra M, Naik SG, Chahal HK, Huynh BH, Outten FW, Fontecave M, Ollagnier de Choudens S
J Am Chem Soc. 2009 May 6;131(17):6149-53. doi: 10.1021/ja807551e.
Native Escherichia coli SufA, coexpressed with SufBCDSE, purifies as a [2Fe-2S] protein and acts as an Fe-S transporter to Fe-S target enzymes.
Neumann M, Mittelstadt G, Iobbi-Nivol C, Saggu M, Lendzian F, Hildebrandt P, Leimkuhler S
FEBS J. 2009 May;276(10):2762-74. doi: 10.1111/j.1742-4658.2009.07000.x. Epub 2009 Apr 1.
A periplasmic aldehyde oxidoreductase represents the first molybdopterin cytosine dinucleotide cofactor containing molybdo-flavoenzyme from Escherichia coli.
Guymer D, Maillard J, Sargent F
Arch Microbiol. 2009 Jun;191(6):519-28. doi: 10.1007/s00203-009-0478-7. Epub 2009 May 5.
A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12.
Mueller M, Grauschopf U, Maier T, Glockshuber R, Ban N
Nature. 2009 Jun 4;459(7247):726-30. doi: 10.1038/nature08026.
The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism.
Zhang J, Xing X, Herr AB, Bell CE
Structure. 2009 May 13;17(5):690-702. doi: 10.1016/j.str.2009.03.008.
Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.
Sung MT, Lai YT, Huang CY, Chou LY, Shih HW, Cheng WC, Wong CH, Ma C
Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8824-9. doi: 10.1073/pnas.0904030106. Epub 2009 May 19.
Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli.
Bodelon G, Marin E, Fernandez LA
J Bacteriol. 2009 Aug;191(16):5169-79. doi: 10.1128/JB.00458-09. Epub 2009 Jun 12.
Role of periplasmic chaperones and BamA (YaeT/Omp85) in folding and secretion of intimin from enteropathogenic Escherichia coli strains.
Engl C, Jovanovic G, Lloyd LJ, Murray H, Spitaler M, Ying L, Errington J, Buck M
Mol Microbiol. 2009 Aug;73(3):382-96. doi: 10.1111/j.1365-958.2009.06776.x. Epub 2009 Jun 22.
In vivo localizations of membrane stress controllers PspA and PspG in Escherichia coli.
Ramasamy SK, Clemons WM Jr
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Aug 1;65(Pt 8):746-50. doi: 10.1107/S1744309109023811. Epub 2009 Jul 21.
Structure of the twin-arginine signal-binding protein DmsD from Escherichia coli.
Su CC, Yang F, Long F, Reyon D, Routh MD, Kuo DW, Mokhtari AK, Van Ornam JD, Rabe KL, Hoy JA, Lee YJ, Rajashankar KR, Yu EW
J Mol Biol. 2009 Oct 23;393(2):342-55. doi: 10.1016/j.jmb.2009.08.029
Crystal structure of the membrane fusion protein CusB from Escherichia coli.
Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV
J Biol Chem. 2009 Oct 30;284(44):30594-603. doi: 10.1074/jbc.M109.012278. Epub 2009 Sep 2.
The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase.
Hemm MR, Paul BJ, Miranda-RĂ­os J, Zhang A, Soltanzad N, Storz G
J Bacteriol. 2010 Jan;192(1):46-58
Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies.
Carabetta VJ, Mohanty BK, Kushner SR, Silhavy TJ
J Bacteriol. 2009 Nov;191(22):6812-21. doi: 10.1128/JB.00870-09. Epub 2009 Sep18.
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli.
Waksman G, Hultgren SJ
Nat Rev Microbiol. 2009 Nov;7(11):765-74. doi: 10.1038/nrmicro2220. Epub 2009 Oct 12.
Structural biology of the chaperone-usher pathway of pilus biogenesis.
Arends SJ, Williams K, Scott RJ, Rolong S, Popham DL, Weiss DS
J Bacteriol. 2010 Jan;192(1):242-55. doi: 10.1128/JB.01244-09
Discovery and characterization of three new Escherichia coli septal ring proteins that contain a SPOR domain: DamX, DedD, and RlpA.
Metzger LE 4th, Raetz CR.
Biochemistry. 2009
Purification and characterization of the lipid A disaccharide synthase (LpxB) from Escherichia coli, a peripheral membrane protein.
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