STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Zogaj X, Nimtz M, Rohde M, Bokranz W, Romling U
Mol Microbiol. 2001 Mar;39(6):1452-63.
The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix.
Izutsu K, Wada C, Komine Y, Sako T, Ueguchi C, Nakura S, Wada A
J Bacteriol. 2001 May;183(9):2765-73.
Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase.
Alba BM, Zhong HJ, Pelayo JC, Gross CA
Mol Microbiol. 2001 Jun;40(6):1323-33.
degS (hhoB) is an essential Escherichia coli gene whose indispensable function is to provide sigma (E) activity.
Vandeputte-Rutten L, Kramer RA, Kroon J, Dekker N, Egmond MR, Gros P
EMBO J. 2001 Sep 17;20(18):5033-9
Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site.
Meganathan R
FEMS Microbiol Lett. 2001 Sep 25;203(2):131-9.
Ubiquinone biosynthesis in microorganisms.
Chen JC, Beckwith J
Mol Microbiol. 2001 Oct;42(2):395-413.
FtsQ, FtsL and FtsI require FtsK, but not FtsN, for co-localization with FtsZ during Escherichia coli cell division.
Dutzler R, Campbell EB, Cadene M, Chait BT, MacKinnon R
Nature. 2002 Jan 17;415(6869):287-94
X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity.
Coutts G, Thomas G, Blakey D, Merrick M
EMBO J. 2002 Feb 15;21(4):536-45.
Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.
Ferguson AD, Chakraborty R, Smith BS, Esser L, van der Helm D, Deisenhofer J
Science. 2002 Mar 1;295(5560):1715-9
Structural basis of gating by the outer membrane transporter FecA.
Jormakka M, Tornroth S, Byrne B, Iwata S
Science. 2002 Mar 8;295(5561):1863-8.
Molecular basis of proton motive force generation: structure of formate dehydrogenase-N.
Rangachari K, Davis CT, Eccleston JF, Hirst EM, Saldanha JW, Strath M, Wilson RJ
FEBS Lett. 2002 Mar 13;514(2-3):225-8.
SufC hydrolyzes ATP and interacts with SufB from Thermotoga maritima.
Walz AC, Demel RA, de Kruijff B, Mutzel R
Biochem J. 2002 Jul 15;365(Pt 2):471-9.
Aerobic sn-glycerol-3-phosphate dehydrogenase from Escherichia coli binds to the cytoplasmic membrane through an amphipathic alpha-helix.
Locher KP, Lee AT, Rees DC
Science. 2002 May 10;296(5570):1091-8
The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.
Mahren S, Enz S, Braun V
J Bacteriol. 2002 Jul;184(13):3704-11.
Functional interaction of region 4 of the extracytoplasmic function sigma factor FecI with the cytoplasmic portion of the FecR transmembrane protein of the Escherichia coli ferric citrate transport system.
Hwang PM, Choy WY, Lo EI, Chen L, Forman-Kay JD, Raetz CR, Privé GG, Bishop RE, Kay LE
Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13560-5
Solution structure and dynamics of the outer membrane enzyme PagP by NMR.
Murakami S, Nakashima R, Yamashita E, Yamaguchi A
Nature. 2002 Oct 10;419(6907):587-93
Crystal structure of bacterial multidrug efflux transporter AcrB.
Bass RB, Strop P, Barclay M, Rees DC
Science. 2002 Nov 22;298(5598):1582-7
Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel.
Gevaert K, Van Damme J, Goethals M, Thomas GR, Hoorelbeke B, Demol H, Martens L, Puype M, Staes A, Vandekerckhove J
Mol Cell Proteomics. 2002 Nov;1(11):896-903.
Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins.
Yankovskaya V, Horsefield R, Törnroth S, Luna-Chavez C, Miyoshi H, Léger C, Byrne B, Cecchini G, Iwata S
Science. 2003 Jan 31;299(5607):700-4
Architecture of succinate dehydrogenase and reactive oxygen species generation.
Blocker A, Komoriya K, Aizawa S
Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3027-30. Epub 2003 Mar 11.
Type III secretion systems and bacterial flagella: insights into their function from structural similarities.
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