STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Wu J, Woodard RW
J Biol Chem. 2003 May 16;278(20):18117-23. Epub 2003 Mar 14.
Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
Zhang Z, Aboulwafa M, Smith MH, Saier MH Jr
J Bacteriol. 2003 Apr;185(7):2243-50.
The ascorbate transporter of Escherichia coli.
Wang G, Keifer PA, Peterkofsky A
Protein Sci. 2003 May;12(5):1087-96.
Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles.
Turner S, Reid E, Smith H, Cole J
Biochem J. 2003 Aug 1;373(Pt 3):865-73.
A novel cytochrome c peroxidase from Neisseria gonorrhoeae: a lipoprotein from a Gram-negative bacterium.
Ricagno S, Jonsson S, Richards N, Lindqvist Y
EMBO J. 2003 Jul 1;22(13):3210-9.
Formyl-CoA transferase encloses the CoA binding site at the interface of an interlocked dimer.
Yeats C, Bateman A
Trends Biochem Sci. 2003 Jul;28(7):352-5.
The BON domain: a putative membrane-binding domain.
Abramson J, Smirnova I, Kasho V, Verner G, Kaback HR, Iwata S
Science. 2003 Aug 1;301(5633):610-5
Structure and mechanism of the lactose permease of Escherichia coli.
Outten FW, Wood MJ, Munoz FM, Storz G
J Biol Chem. 2003 Nov 14;278(46):45713-9. Epub 2003 Aug 26.
The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli.
Bayan N, Therisod H
Biochim Biophys Acta. 1992 Jan 24;1123(2):191-7.
Photoaffinity cross-linking of acyl carrier protein to Escherichia coli membranes.
Kato J, Suzuki H, Ikeda H
J Biol Chem. 1992 Dec 25;267(36):25676-84.
Purification and characterization of DNA topoisomerase IV in Escherichia coli.
Cowan SW, Schirmer T, Rummel G, Steiert M, Ghosh R, Pauptit RA, Jansonius JN, Rosenbusch JP
Nature. 1992 Aug 27;358(6389):727-33
Crystal structures explain functional properties of two E. coli porins.
Lubitz SP, Weiner JH
Arch Biochem Biophys. 2003 Oct 15;418(2):205-16
The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC).
Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E
J Biol Chem. 2004 Feb 20;279(8):6613-9. Epub 2003 Dec 3.
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli.
Savage DF, Egea PF, Robles-Colmenares Y, O'Connell JD 3rd, Stroud RM
PLoS Biol. 2003 Dec;1(3):E72
Architecture and selectivity in aquaporins: 2.5 a X-ray structure of aquaporin Z.
Scott JD, Ludwig RA
Microbiology. 2004 Jan;150(Pt 1):117-26.
Azorhizobium caulinodans electron-transferring flavoprotein N electrochemically couples pyruvate dehydrogenase complex activity to N2 fixation.
Hiniker A, Bardwell JC
J Biol Chem. 2004 Mar 26;279(13):12967-73. Epub 2004 Jan 15.
In vivo substrate specificity of periplasmic disulfide oxidoreductases.
Edgren T, Nordlund S
J Bacteriol. 2004 Apr;186(7):2052-60.
The fixABCX genes in Rhodospirillum rubrum encode a putative membrane complex participating in electron transfer to nitrogenase.
Bohm A, Boos W
Curr Opin Microbiol. 2004 Apr;7(2):151-6.
Gene regulation in prokaryotes by subcellular relocalization of transcription factors.
van den Berg B, Black PN, Clemons WM Jr, Rapoport TA
Science. 2004 Jun 4;304(5676):1506-9
Crystal structure of the long-chain fatty acid transporter FadL.
Pradel N, Ye C, Wu LF
Biochem Biophys Res Commun. 2004 Jul 9;319(4):1276-80
A cleavable signal peptide is required for the full function of the polytopic inner membrane protein FliP of Escherichia coli.
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