STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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Protein with experimentally verified sub-cellular topologies

Pubmed ID
First Author
Publication Title
Relevant Protein
Marani P, Wagner S, Baars L, Genevaux P, de Gier JW, Nilsson I, Casadio R, von Heijne G
Protein Sci. 2006 Apr;15(4):884-9
New Escherichia coli outer membrane proteins identified through prediction and experimental verification.
MacLachlan PR, Kadam SK, Sanderson KE
J Bacteriol. 1991 Nov;173(22):7151-63.
Cloning, characterization, and DNA sequence of the rfaLK region for lipopolysaccharide synthesis in Salmonella typhimurium LT2.
Yin Y, He X, Szewczyk P, Nguyen T, Chang G
Science. 2006 May 5;312(5774):741-4
Structure of the multidrug transporter EmrD from Escherichia coli.
Palchevskiy V, Finkel SE
J Bacteriol. 2006 Jun;188(11):3902-10.
Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient.
Malinverni JC, Werner J, Kim S, Sklar JG, Kahne D, Misra R, Silhavy TJ
Mol Microbiol. 2006 Jul;61(1):151-64.
YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli.
Lasserre JP, Beyne E, Pyndiah S, Lapaillerie D, Claverol S, Bonneu M
Electrophoresis. 2006 Aug;27(16):3306-21.
A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis.
Volpon L, Young CR, Matte A, Gehring K
Protein Sci. 2006 Oct;15(10):2435-41. Epub 2006 Sep 8.
NMR structure of the enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system and its interaction with GatA.
Petrushenko ZM, Lai CH, Rybenkov VV
J Biol Chem. 2006 Nov 10;281(45):34208-17. Epub 2006 Sep 18.
Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB.
Wang Y, Zhang Y, Ha Y
Nature. 2006 Nov 9;444(7116):179-80
Crystal structure of a rhomboid family intramembrane protease.
Sperandeo P, Cescutti R, Villa R, Di Benedetto C, Candia D, Deho G, Polissi A
J Bacteriol. 2007 Jan;189(1):244-53. Epub 2006 Oct 20.
Characterization of lptA and lptB, two essential genes implicated in lipopolysaccharide transport to the outer membrane of Escherichia coli.
Inaba K, Murakami S, Suzuki M, Nakagawa A, Yamashita E, Okada K, Ito K
Cell. 2006 Nov 17;127(4):789-801
Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.
Yamagata A, Tainer JA
EMBO J. 2007 Feb 7;26(3):878-90. Epub 2007 Jan 25.
Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
Watt RM, Wang J, Leong M, Kung HF, Cheah KS, Liu D, Danchin A, Huang JD
Nucleic Acids Res. 2007;35(6):e37. Epub 2007 Jan 31.
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes.
Lee CR, Cho SH, Yoon MJ, Peterkofsky A, Seok YJ
Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):4124-9. Epub 2007 Feb 8.
Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA.
Small E, Marrington R, Rodger A, Scott DJ, Sloan K, Roper D, Dafforn TR, Addinall SG
J Mol Biol. 2007 May 25;369(1):210-21. Epub 2007 Mar 19.
FtsZ polymer-bundling by the Escherichia coli ZapA orthologue, YgfE, involves a conformational change in bound GTP.
Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW
Mol Cell Proteomics. 2007 Sep;6(9):1527-50. Epub 2007 Apr 19.
Consequences of membrane protein overexpression in Escherichia coli.
Hakoshima T, Ichihara H
Methods Enzymol. 2007;422:288-304.
Structure of SixA, a histidine protein phosphatase of the ArcB histidine-containing phosphotransfer domain in Escherichia coli.
Fujisawa M, Ito M, Krulwich TA
Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13289-94. Epub 2007 Aug 6.
Three two-component transporters with channel-like properties have monovalent cation/proton antiport activity.
Weiner JH, Li L
Biochim Biophys Acta. 2008 Sep;1778(9):1698-713. Epub 2007 Aug 11.
Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis.
Wadler CS, Vanderpool CK
Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20454-9
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide.
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