STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YJCH_ECOLI
P0AF54
yjcH
b4068 JW4029
integral IM protein (SEC in IM), YjcH
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PLAP_ECOLI
P0AA47
plaP

yeeF

b2014 JW5330
integral IM protein (SEC in IM), Low-affinity putrescine importer PlaP
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YFDV_ECOLI
P0AA49
yfdV
b2372 JW2369
integral IM protein (SEC in IM), transporter YfdV
Integral Inner Membrane
B
IM (predicted)
Cell membrane
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
no
yes
QMCA_ECOLI
P0AA53
qmcA

ybbK

b0489 JW0478
integral IM protein (SEC in IM), QmcA
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane
Membrane anchored
 
SRP
SEC
 
 
yes
yes
YGHB_ECOLI
P0AA60
yghB
b3009 JW2976
integral IM protein (SEC in IM) of DedA family, YghB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YQJA_ECOLI
P0AA63
yqjA
b3095 JW3066
integral IM protein (SEC in IM) of DedA family, YqjA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YJET_ECOLI
P0AF73
yjeT
b4176 JW4134
integral IM protein (SEC in IM), YjeT
Integral Inner Membrane
B
IM (predicted)
Cell membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YJFL_ECOLI
P0AF80
yjfL
b4184 JW4142
integral IM protein (SEC in IM), UPF0719 YjfL
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
PSPC_ECOLI
P0AFN2
pspC
b1306 JW1299
integral IM protein (SEC in IM), Phage shock C PspC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Membrane anchored
 
SRP
SEC
 
 
yes
no
YMIA_ECOLI
P0CB62
ymiA
b4522 JW1267.1
integral IM protein (SEC in IM), YmiA
Integral Inner Membrane
B
N/A
Membrane
-
 
 
SEC
 
 
no
yes
RHTA_ECOLI
P0AA67
rhtA

ybiF

b0813 JW0798
integral IM protein (SEC in IM), Threonine/homoserine exporter RhtA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YEDA_ECOLI
P0AA70
yedA
b1959 JW1942
integral IM protein (SEC in IM), transporter YedA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YHBE_ECOLI
P0AA73
yhbE
b3184 JW3151
integral IM protein (SEC in IM), transporter YhbE
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
DGOT_ECOLI
P0AA76
dgoT

yidT

b3691 JW5859
integral IM protein (SEC-YidC in IM), D-galactonate transporter DgoT
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC-YidC
 
 
yes
yes
EXUT_ECOLI
P0AA78
exuT
b3093 JW3064
integral IM protein (SEC in IM), Hexuronate transporter ExuT
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PHNE1_ECOLI
P0DP69
phnE1
b4104 JW4065
integral IM protein (SEC in IM), Putative cryptic phosphonate transport system permease PhnE1
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
 
SEC
 
 
 
 
LDRA_ECOLI
P0DPD0
ldrA
b4419 JW5957
integral IM protein (SEC in IM), Small toxic polypeptide LdrA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Cytoplasmic
 
SRP
SEC
 
 
yes
yes
LDRC_ECOLI
P0DPD1
ldrC
b4423 JW5959
integral IM protein (SEC in IM), Small toxic polypeptide LdrC
Integral Inner Membrane
B
N/A
Cell inner membrane
-
 
 
SEC
 
 
 
 
YIAB_ECOLI
P11286
yiaB
b3563 JW5654
integral IM protein (SEC in IM), YiaB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
GARP_ECOLI
P0AA80
garP

yhaU

b3127 JW3096
integral IM protein (SEC in IM), Probable galactarate transporter GarP
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
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