STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YHID_ECOLI
P0AFV2
yhiD

yhhE

b3508 JW5670
Uncharacterized protein yhiD
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
MDLB_ECOLI
P0AAG5
mdlB

mdl

b0449 JW5061
Multidrug resistance-like ATP-binding protein mdlB (EC 3.6.3.44)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
FTSH_ECOLI
P0AAI3
ftsH

hflB mrsC std tolZ

b3178 JW3145
ATP-dependent zinc metalloprotease FtsH (EC 3.4.24.-) (Cell division protease FtsH)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP,TF
SEC
 
 
no
yes
FDNH_ECOLI
P0AAJ3
fdnH
b1475 JW1471
Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit (Anaerobic formate dehydrogenase iron-sulfur subunit) (Formate dehydrogenase-N subunit beta) (FDH-N subunit beta)
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Single-pass membrane protein
Membrane anchored (Experimental)
 
SRP
SEC
 
 
yes
yes
YMIA_ECOLI
P0CB62
ymiA
b4522 JW1267.1
Uncharacterized protein ymiA
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
-
 
 
SEC
 
 
no
yes
YIAB_ECOLI
P11286
yiaB
b3563 JW5654
Inner membrane protein yiaB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
FLIO_ECOLI
P22586
fliO

flaP flbD

b1947 JW5316
Flagellar protein fliO
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Single-pass membrane proteinBacterial flagellum basal body
Membrane anchored
flagellum
SRP
SEC
 
 
no
yes
YCCB_ECOLI
P24244
yccB
b4592 JW0961.1 b0979.1
Uncharacterized protein yccB
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
CYBH_ECOLI
P0AAM1
hyaC
b0974 JW0956
Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ADRA_ECOLI
P0AAP1
adrA

yaiC

b0385 JW0376
Probable diguanylate cyclase AdrA (DGC) (EC 2.7.7.65)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein(experimental)
 
SRP
SEC
 
 
yes
yes
YBBJ_ECOLI
P0AAS3
ybbJ
b0488 JW5065
Inner membrane protein ybbJ
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YBDG_ECOLI
P0AAT4
mscM

ybdG

b0577 JW0566
Uncharacterized protein ybdG
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ELYC_ECOLI
P0AB01
ycbC
b0920 JW0903
Uncharacterized protein ycbC
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YIGF_ECOLI
P27842
yigF
b3817 JW3790
Uncharacterized protein yigF
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YIGG_ECOLI
P27843
yigG
b3818 JW5590
Uncharacterized protein yobI
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YHHH_ECOLI
P28911
yhhH
b3483 JW3449
Uncharacterized protein yhhH (ORF-B2)
Integral Inner Membrane
B
IM (predicted)
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
YIDI_ECOLI
P31446
yidI
b3677 JW3653
Inner membrane protein yidI
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
LAPB_ECOLI
P0AB58
yciM
b1280 JW1272
Uncharacterized protein yciM
Integral Inner Membrane
B
Soluble IM Fraction
 
Periplasmic
 
 
SEC
 
 
yes
yes
PNTB_ECOLI
P0AB67
pntB
b1602 JW1594
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Nicotinamide nucleotide transhydrogenase subunit beta) (Pyridine nucleotide transhydrogenase subunit beta)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ARSB_ECOLI
P0AB93
arsB

arsF

b3502 JW3469
Arsenical pump membrane protein (Arsenic efflux pump protein)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
no
yes
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