STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
ATP6_ECOLI
P0AB98
atpB

papD uncB

b3738 JW3716
ATP synthase subunit a (ATP synthase F0 sector subunit a) (F-ATPase subunit 6)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
YidC
 
 
yes
yes
CBRB_ECOLI
P31468
cbrB

yieI

b3716 JW3694
Inner membrane protein CbrB (CreB-regulated gene B protein)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YDCD_ECOLI
P31991
ydcD
b1457 JW1452
Uncharacterized protein ydcD (ORF-E2)
Integral Inner Membrane
B
IM (predicted)
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
YIBI_ECOLI
P32108
yibI
b3598 JW3572
Uncharacterized protein yibI
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PSPG_ECOLI
P32696
pspG

yjbO

b4050 JW5716
Phage shock protein G
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
no
ATPF_ECOLI
P0ABA0
atpF

papF uncF

b3736 JW3714
ATP synthase subunit b (ATP synthase F(0) sector subunit b) (ATPase subunit I) (F-type ATPase subunit b) (F-ATPase subunit b)
Integral Inner Membrane
B
Soluble IM Fraction
Cell inner membrane | Single-pass membrane protein
Membrane anchored (Experimental)
 
SRP
SEC
 
 
no
yes
ATMA_ECOLI
P0ABB8
mgtA

corB mgt

b4242 JW4201
Magnesium-transporting ATPase, P-type 1 (EC 3.6.3.2) (Mg(2+) transport ATPase, P-type 1)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
HFLC_ECOLI
P0ABC3
hflC

hflA

b4175 JW4133
Uncharacterized protein yqeL
Integral Inner Membrane
B
Soluble IM Fraction
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored (Experimental)
 
SRP
SEC
 
 
yes
yes
HFLK_ECOLI
P0ABC7
hflK

hflA

b4174 JW4132
Modulator of FtsH protease HflK
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
no
YJCB_ECOLI
P32700
yjcB
b4060 JW5718
Uncharacterized protein yjcB
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
NRFF_ECOLI
P32711
nrfF

yjcM

b4075 JW4036
Formate-dependent nitrite reductase complex subunit nrfF
Integral Inner Membrane
B
IM (predicted)
Periplasm
Membrane anchored
 
SRP
SEC
 
 
no
yes
BETT_ECOLI
P0ABC9
betT
b0314 JW0306
High-affinity choline transport protein
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YEAV_ECOLI
P0ABD1
yeaV
b1801 JW5293
Uncharacterized protein ynbG
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
C561_ECOLI
P0ABE5
cybB
b1418 JW5224
Cytochrome b561 (Cytochrome b-561)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
no
yes
PGSA_ECOLI
P0ABF8
pgsA
b1912 JW1897
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) (Phosphatidylglycerophosphate synthase) (PGP synthase)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP (exp)
SEC
 
 
yes
yes
CDSA_ECOLI
P0ABG1
cdsA

cds

b0175 JW5810
Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-DAG synthase) (CDP-DG synthase) (CDP-diacylglycerol synthase) (CDS) (CDP-diglyceride pyrophosphorylase) (CDP-diglyceride synthase) (CTP:phosphatidate cytidylyltransferase)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP (exp)
SEC
 
 
yes
yes
MOKC_ECOLI
P33236
mokC

gefL

b0018 JW5879
Regulatory protein mokC
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
Periplasmic
 
SRP
SEC
 
 
no
yes
YBBD_ECOLI
P33669
ybbD
b0501 JW0489
Putative uncharacterized protein ybbD
Integral Inner Membrane
B
IM (predicted)
 
Membrane anchored
 
SRP
SEC
 
 
no
no
PPDD_ECOLI
P36647
ppdD
b0108 JW0104
Prepilin peptidase-dependent protein D
Integral Inner Membrane
B
IM (predicted)
Fimbrium
Membrane anchored
 
SRP
SEC
 
 
no
yes
FTSW_ECOLI
P0ABG4
ftsW
b0089 JW0087
Cell division protein ftsW
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
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