STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
CRED_ECOLI
P08369
creD

cet

b4400 JW4363
Inner membrane protein creD
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
no
yes
SPPA_ECOLI
P08395
sppA
b1766 JW1755
Protease 4 (EC 3.4.21.-) (Endopeptidase IV) (Protease IV) (Signal peptide peptidase)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
PHOR_ECOLI
P08400
phoR

nmpB

b0400 JW0390
Phosphate regulon sensor protein phoR (EC 2.7.13.3)
Integral Inner Membrane
B
N/A
Cell inner membrane | Multi-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
YBAN_ECOLI
P0AAR5
ybaN
b0468 JW0457
Inner membrane protein ybaN
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YLAC_ECOLI
P0AAS0
ylaC
b0458 JW5063
Inner membrane protein ylaC
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YBFA_ECOLI
P0AAU2
ybfA
b0699 JW0688
Uncharacterized protein ybfA
Integral Inner Membrane
B
IM (predicted)
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
CREC_ECOLI
P08401
creC

phoM

b4399 JW4362
Sensor protein creC (EC 2.7.13.3)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
yes
yes
DSDX_ECOLI
P08555
dsdX

yfdA yfdD

b2365 JW2362
DsdX permease
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
no
yes
PTV3B_ECOLI
P08722
bglF

bglC bglS

b3722 JW3700
PTS system beta-glucoside-specific EIIBCA component (EIIBCA-Bgl) (EII-Bgl) [Includes: Beta-glucoside-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system beta-glucoside-specific EIIB component); Beta-glucoside permease IIC component
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
HEMX_ECOLI
P09127
hemX
b3803 JW3775
Putative uroporphyrinogen-III C-methyltransferase (Urogen-III methylase) (EC 2.1.1.107) (ORF X)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
no
yes
YBFB_ECOLI
P0AAU5
ybfB
b0702 JW0691
Uncharacterized protein ybfB
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YBGE_ECOLI
P0AAV0
ybgE
b0735 JW0725
Uncharacterized protein ybgE
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YBHQ_ECOLI
P0AAW5
ybhQ
b0791 JW0774
Inner membrane protein ybhQ
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PTW3C_ECOLI
P09323
nagE

pstN

b0679 JW0665
PTS system N-acetylglucosamine-specific EIICBA component (EIICBA-Nag) (EII-Nag) [Includes: N-acetylglucosamine permease IIC component (PTS system N-acetylglucosamine-specific EIIC component); N-acetylglucosamine-specific phosphotransferase enzyme IIB comp
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
MOTA_ECOLI
P09348
motA

flaJ

b1890 JW1879
Motility protein A (Chemotaxis protein MotA)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
GLPG_ECOLI
P09391
glpG
b3424 JW5687
Rhomboid protease glpG (EC 3.4.21.105) (Intramembrane serine protease)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP (exp)
SEC
 
 
yes
yes
DEDD_ECOLI
P09549
dedD
b2314 JW5378
Protein dedD. DedD is a cell division protein; it contains a C-terminal SPOR domain which targets the protein to the septal ring.
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
 
Membrane anchored
 
SRP
SEC
 
 
yes
yes
YBHT_ECOLI
P0AAW9
ybhT
b0762 JW5102
Bacteriophage N4 adsorption protein B
Integral Inner Membrane
B
IM (predicted)
Membrane | Single-pass membrane protein
Membrane anchored
 
SRP
YidC
 
 
no
yes
YBJO_ECOLI
P0AAZ0
ybjO
b0858 JW0842
Inner membrane protein ybjO
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YCCF_ECOLI
P0AB12
yccF
b0961 JW0944
Inner membrane protein yccF
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
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