STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
UHPB_ECOLI
P09835
uhpB
b3668 JW3643
Sensor protein uhpB (EC 2.7.13.3)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
UHPC_ECOLI
P09836
uhpC
b3667 JW3642
Regulatory protein uhpC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
UBIB_ECOLI
P0A6A0
ubiB

aarF yigQ yigR yigS

b3835 JW3812
Probable ubiquinone biosynthesis protein ubiB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
CLSA_ECOLI
P0A6H8
clsA

cls nov yciJ

b1249 JW1241
Cardiolipin synthase (CL synthase) (EC 2.7.8.-)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YCFJ_ECOLI
P0AB35
ycfJ
b1110 JW1096
Uncharacterized protein ycfJ
Integral Inner Membrane
B
N/A
Membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
YCHH_ECOLI
P0AB49
ychH
b1205 JW1196
Uncharacterized protein ychH
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ATPZ_ECOLI
P0ABC0
atpI

uncI

b3739 JW5611
ATP synthase protein I
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
yes
yes
CYSZ_ECOLI
P0A6J3
cysZ
b2413 JW2406
Protein cysZ
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
YidC
 
 
yes
yes
DSBB_ECOLI
P0A6M2
dsbB

roxB ycgA

b1185 JW5182
Disulfide bond formation protein B (Disulfide oxidoreductase)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
yes
yes
MRAY_ECOLI
P0A6W3
mraY

murX

b0087 JW0085
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
KDGT_ECOLI
P0A712
kdgT
b3909 JW5560
2-keto-3-deoxygluconate permease (KDG permease)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
MRED_ECOLI
P0ABH4
mreD
b3249 JW3218
Rod shape-determining protein mreD
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
CYOD_ECOLI
P0ABJ6
cyoD
b0429 JW0419
Cytochrome o ubiquinol oxidase protein cyoD (Ubiquinol oxidase chain D)
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
CCMD_ECOLI
P0ABM5
ccmD

yojM

b2198 JW2186
Heme exporter protein D (Cytochrome c-type biogenesis protein CcmD)
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Single-pass membrane protein
Membrane anchored
 
SRP
SEC
 
 
no
yes
EXBD_ECOLI
P0ABV2
exbD
b3005 JW2973
Biopolymer transport protein exbD
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored
 
SRP
SEC
 
 
yes
yes
MSCL_ECOLI
P0A742
mscL

yhdC

b3291 JW3252
Large-conductance mechanosensitive channel
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
YidC
 
 
yes
yes
MNTH_ECOLI
P0A769
mntH

yfeP

b2392 JW2388
Manganese transport protein mntH
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
GPMB_ECOLI
P0A7A2
gpmB

ytjC

b4395 JW4358
Probable phosphoglycerate mutase gpmB (EC 5.4.2.1) (PGAM) (Phosphoglyceromutase)
Integral Inner Membrane
B
N/A
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
DCTA_ECOLI
P0A830
dctA
b3528 JW3496
Aerobic C4-dicarboxylate transport protein
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
YidC
 
 
no
yes
ZUPT_ECOLI
P0A8H3
zupT

ygiE

b3040 JW3008
Zinc transporter zupT
Integral Inner Membrane
B
IM (predicted)
Cell membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
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