STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) membranome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) membranome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YIBI_ECOLI
P32108
yibI
b3598 JW3572
integral IM protein (SEC in IM), YibI
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PSPG_ECOLI
P32696
pspG

yjbO

b4050 JW5716
integral IM protein (SEC in IM), Phage shock G PspG
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
no
YJCB_ECOLI
P32700
yjcB
b4060 JW5718
integral IM protein (SEC in IM), YjcB
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
PROY_ECOLI
P0AAE2
proY

yajM

b0402 JW5055
integral IM protein (SEC in IM), Proline-specific permease ProY
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
ARCD_ECOLI
P0AAE5
ydgI
b1605 JW1597
nucleoid & integral IM protein (SEC in IM), Putative arginine/ornithine antiporter YdgI
Integral Inner Membrane, Nucleoid
B, N
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein (Experimental)
 
SRP
SEC
 
 
yes
yes
CADB_ECOLI
P0AAE8
cadB
b4132 JW4093
integral IM protein (SEC-YidC in IM), Probable cadaverine/lysine antiporter CadB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC-YidC
 
 
yes
yes
POTE_ECOLI
P0AAF1
potE
b0692 JW0679
integral IM protein (SEC in IM), Putrescine transporter PotE PotE
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
NRFF_ECOLI
P32711
nrfF

yjcM

b4075 JW4036
integral IM protein (SEC in IM), Formate-dependent nitrite reductase complex subunit NrfF
Integral Inner Membrane
B
IM (predicted)
Periplasm
Membrane anchored
 
SRP
SEC
 
 
no
yes
MOKC_ECOLI
P33236
mokC

gefL

b0018 JW5879
integral IM protein (SEC in IM), Regulatory MokC
Integral Inner Membrane
B
N/A
Cell inner membrane
Periplasmic
 
SRP
SEC
 
 
no
yes
YBBD_ECOLI
P33669
ybbD
b0501 JW0489
integral IM protein (SEC in IM), Putative YbbD
Integral Inner Membrane
B
IM (predicted)
Membrane
Membrane anchored
 
SRP
SEC
 
 
no
no
PPDD_ECOLI
P36647
ppdD
b0108 JW0104
integral IM protein (SEC in IM), Prepilin peptidase-dependent D PpdD
Integral Inner Membrane
B
IM (predicted)
Fimbrium
Membrane anchored
 
SRP
SEC
 
 
no
yes
MDLB_ECOLI
P0AAG5
mdlB

mdl

b0449 JW5061
integral IM protein (SEC in IM), Multidrug resistance-like ATP-binding MdlB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
FTSH_ECOLI
P0AAI3
ftsH

hflB mrsC std tolZ

b3178 JW3145
integral IM protein (SEC in IM), ATP-dependent zinc metalloprotease FtsH
Integral Inner Membrane
B
IM (predicted), Detected in IM Fraction
Cell inner membrane
Integral Membrane Protein (Experimental)
 
SRP,TF
SEC
 
 
no
yes
FDNH_ECOLI
P0AAJ3
fdnH
b1475 JW1471
integral IM protein (SEC in IM), Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit FdnH
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Membrane anchored (Experimental)
 
SRP
SEC
 
 
yes
yes
HOKA_ECOLI
P37305
hokA

yiaZ

b4455 JW3526
integral IM protein (SEC in IM), HokA
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Membrane anchored
 
SRP
SEC
 
 
no
yes
YHHL_ECOLI
P37614
yhhL
b3466 JW5683
integral IM protein (SEC in IM), YhhL
Integral Inner Membrane
B
IM (predicted)
 
Integral Membrane Protein
 
SRP
SEC
 
 
no
yes
YHHM_ECOLI
P37615
yhhM
b3467 JW3432
integral IM protein (SEC in IM), YhhM
Integral Inner Membrane
B
N/A
 
Membrane anchored
 
SRP
SEC
 
 
yes
yes
SIEB_ECOLI
P38392
sieB
b1353 JW5209
integral IM protein (SEC in IM), Superinfection exclusion B SieB
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein
 
SRP
SEC
 
 
no
no
CYBH_ECOLI
P0AAM1
hyaC
b0974 JW0956
integral IM protein (SEC in IM), Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit HyaC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane; Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
DGCC_ECOLI
P0AAP1
dgcC

adrA yaiC

b0385 JW0376
integral IM protein (SEC in IM), Probable diguanylate cyclase DgcC
Integral Inner Membrane
B
IM (predicted)
Cell inner membrane
Integral Membrane Protein(experimental)
 
SRP
SEC
 
 
yes
yes
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