STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Proteins with multiple sub-cellular topologies in E.coli K-12 (MG1655)  Export to Excel  Export to CSV  

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Proteins with multiple sub-cellular topologies in E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RPOD_ECOLI
P00579
rpoD

alt

b3067 JW3039
cytoplasmic nucleoid peripheral IM protein, RNA polymerase sigma factor RpoD
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
DPO1_ECOLI
P00582
polA

resA

b3863 JW3835
cytoplasmic nucleoid peripheral IM protein, DNA polymerase I PolA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
SYA_ECOLI
P00957
alaS

lovB

b2697 JW2667
cytoplasmic nucleoid peripheral IM protein, Alanine--tRNA ligase AlaS
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
no
yes
DNAA_ECOLI
P03004
dnaA
b3702 JW3679
cytoplasmic nucleoid peripheral IM protein, Chromosomal replication initiator DnaA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
ERA_ECOLI
P06616
era

rbaA sdgE

b2566 JW2550
ribosomal cytoplasmic peripheral IM protein, GTPase Era
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
BIRA_ECOLI
P06709
birA

bioR dhbB

b3973 JW3941
nucleoid & integral IM protein (SEC in IM), Bifunctional ligase/repressor BirA
Integral Inner Membrane, Nucleoid
B, N
IM (predicted)
 
Cytoplasmic
 
SRP
SEC
 
 
yes
yes
MALT_ECOLI
P06993
malT

malA

b3418 JW3381
cytoplasmic nucleoid peripheral IM protein, HTH-type transcriptional regulator MalT
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
PUTA_ECOLI
P09546
putA

poaA

b1014 JW0999
cytoplasmic nucleoid peripheral IM protein, Bifunctional PutA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Soluble IM Fraction
 
Cytoplasmic
 
 
 
 
 
yes
yes
DER_ECOLI
P0A6P5
der

engA yfgK

b2511 JW5403
ribosomal cytoplasmic peripheral IM protein, GTPase Der
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
ENO_ECOLI
P0A6P9
eno
b2779 JW2750
cytoplasmic peripheral IM protein facing the cytoplasm & peripheral OM protein facing the extra-cellular space (SEC through IM), Enolase Eno
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, Peripheral outer membrane protein facing the extra-cellular space
A, F1, F4
Soluble IM Fraction
Cytoplasm; cytoskeleton Secreted Cell surface
Cytoplasmic (Experimental)
 
 
SEC
 
 
yes
yes
FIS_ECOLI
P0A6R3
fis
b3261 JW3229
cytoplasmic nucleoid peripheral IM protein, DNA-binding Fis
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm; nucleoid
Cytoplasmic
 
 
 
 
 
yes
yes
HFQ_ECOLI
P0A6X3
hfq
b4172 JW4130
cytoplasmic nucleoid peripheral IM protein, RNA-binding Hfq
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
IHFA_ECOLI
P0A6X7
ihfA

hid himA

b1712 JW1702
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit alpha IhfA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm; nucleoid
Cytoplasmic
 
 
 
 
 
no
yes
IHFB_ECOLI
P0A6Y1
ihfB

himD hip

b0912 JW0895
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit beta IhfB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
IF2_ECOLI
P0A705
infB

gicD ssyG

b3168 JW3137
ribosomal cytoplasmic peripheral IM protein, Translation initiation factor IF-2 InfB
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
IF3_ECOLI
P0A707
infC

fit srjA

b1718 JW5829
ribosomal cytoplasmic peripheral IM protein, Translation initiation factor IF-3 InfC
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
no
yes
RPPH_ECOLI
P0A776
rppH

nudH ygdP

b2830 JW2798
cytoplasmic nucleoid peripheral IM protein, RNA pyrophosphohydrolase RppH
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RECF_ECOLI
P0A7H0
recF

uvrF

b3700 JW3677
cytoplasmic nucleoid peripheral IM protein, DNA replication and repair RecF
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RIMM_ECOLI
P0A7X6
rimM

yfjA

b2608 JW5413
ribosomal cytoplasmic peripheral IM protein, Ribosome maturation factor RimM
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, ribosomal
A, F1, r
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RNC_ECOLI
P0A7Y0
rnc
b2567 JW2551
cytoplasmic nucleoid peripheral IM protein, Ribonuclease 3 Rnc
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
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