entryaccgenealt_geneolnprotein_namesuboci_fullsublocibernselsubloci_echoLorganelletarget_chaperoning11st_sstarget_chaperoning22nd_sspseudocommon_corebasic_proteomesignalp_sp_existsignalp_possignalp_cmaxlipop_predlipop_cleavagelipop_scorelipop_ruletmhmmphobius_tmsphobius_sp_existpsortb_locapsortb_scoresolubilitynterm_cterm
RPOD_ECOLIP00579
rpoD

alt

altb3067 JW3039 RNA polymerase sigma factor rpoD (Sigma-70)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFyesyesN260.104CYT0-0.200913-00="0"Cytoplasmic9.9792.83
SYA_ECOLIP00957
alaS

lovB

lovBb2697 JW2667 Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFnoyesN260.129CYT0-0.200913-00="0"Cytoplasmic9.9757.55
DNAA_ECOLIP03004
dnaA
b3702 JW3679 Chromosomal replication initiator protein dnaANucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN320.146CYT0-0.200913-00="0"Cytoplasmic1038.43
BIRA_ECOLIP06709
birA

bioR dhbB

bioR dhbBb3973 JW3941 Bifunctional protein BirA [Includes: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)]. Deletion of BioR resulted in a 15-fold increase of bio operon transcription in the presence of high biotin levels.Nucleoid, Integral Inner Membrane N, BIM (predicted)CytoplasmicSRPSECyesyesN260.122CYT0-0.200913-02="0"Cytoplasmic1037.71
MALT_ECOLIP06993
malT

malA

malAb3418 JW3381 HTH-type transcriptional regulator MalTNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFyesyesN360.12CYT0-0.200913-00="0"Unknown7.338.98
PUTA_ECOLIP09546
putA

poaA

poaAb1014 JW0999 Bifunctional protein putA [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C dehydrogenase) (EC 1.5.1.12)]Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmicyesyesN640.118CYT0-0.200913-00="0"Cytoplasmic9.97
ENO_ECOLIP0A6P9
eno
b2779 JW2750 Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase)Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, Peripheral outer membrane protein facing the extra-cellular spaceA, F1, F4Soluble IM FractionCytoplasmic (Experimental)Uknown mechanismyesyesN420.139CYT0-0.200913-00="0"Cytoplasmic9.97100.97
FIS_ECOLIP0A6R3
fis
b3261 JW3229 DNA-binding protein fis (Factor-for-inversion stimulation protein) (Hin recombinational enhancer-binding protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN190.116CYT0-0.200913-00="0"Cytoplasmic9.26110.24
IHFA_ECOLIP0A6X7
ihfA

hid himA

hid himAb1712 JW1702 Integration host factor subunit alpha (IHF-alpha)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN240.109CYT0-0.200913-00="0"Cytoplasmic9.97
IHFB_ECOLIP0A6Y1
ihfB

himD hip

himD hipb0912 JW0895 Integration host factor subunit beta (IHF-beta)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN390.116CYT0-0.200913-00="0"Cytoplasmic9.9723.23
RPPH_ECOLIP0A776
rppH

nudH ygdP

nudH ygdPb2830 JW2798 RNA pyrophosphohydrolase (EC 3.6.1.-) ((Di)nucleoside polyphosphate hydrolase) (Ap5A pyrophosphatase)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN250.126CYT0-0.200913-00="0"Cytoplasmic9.2662.91
RECF_ECOLIP0A7H0
recF

uvrF

uvrFb3700 JW3677 DNA replication and repair protein recFNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmicyesyesN320.128CYT0-0.200913-00="0"Cytoplasmic9.976.3
RNC_ECOLIP0A7Y0
rnc
b2567 JW2551 Ribonuclease 3 (EC 3.1.26.3) (Ribonuclease III) (RNase III)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFyesyesN560.133CYT0-0.200913-00="0"Cytoplasmic10116.91
RHLB_ECOLIP0A8J8
rhlB

mmrA

mmrAb3780 JW3753 ATP-dependent RNA helicase rhlB (EC 3.6.4.13)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN560.132CYT0-0.200913-00="0"Cytoplasmic9.97
RRAA_ECOLIP0A8R0
rraA

menG yiiV

menG yiiVb3929 JW3900 Regulator of ribonuclease activity ANucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN340.108CYT0-0.200913-00="0"Cytoplasmic9.97
WZA_ECOLIP0A930
wza
b2062 JW2047 Putative polysaccharide export protein wzaOuter Membrane Lipoprotein, Peripheral outer membrane protein facing the extra-cellular spaceI, F4N/AOuter membrane Lipoprotein (Experimental)SECLOLyesyesY260.13SpII2012.3938Pos+2=T00YOuterMembrane9.9244.16
CYSB_ECOLIP0A9F3
cysB
b1275 JW1267 HTH-type transcriptional regulator cysB (Cys regulon transcriptional activator)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1IM (predicted)CytoplasmicyesyesN240.141CYT0-0.200913-00="0"Cytoplasmic108.39
ARCA_ECOLIP0A9Q1
arcA

cpxC dye fexA msp seg sfrA

cpxC dye fexA msp seg sfrAb4401 JW4364 Aerobic respiration control protein ArcA (Dye resistance protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN280.105CYT0-0.200913-00="0"Cytoplasmic1090.11
OMPR_ECOLIP0AA16
ompR

kmt ompB

kmt ompBb3405 JW3368 Transcriptional regulatory protein ompRNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmicyesyesN380.124CYT0-0.200913-00="0"Cytoplasmic1087.16
ARCD_ECOLIP0AAE5
ydgI
b1605 JW1597 Putative arginine/ornithine antiporterNucleoid, Integral Inner Membrane N, BIM (predicted)Integral Membrane Protein (Experimental)SRPSECyesyesN220.206TMH08.33129-1312YCytoplasmicMembrane10out/out
CYOA_ECOLIP0ABJ1
cyoA
b0432 JW0422 Ubiquinol oxidase subunit 2 (EC 1.10.3.-) (Cytochrome o subunit 2) (Cytochrome o ubiquinol oxidase subunit 2) (Ubiquinol oxidase chain B) (Oxidase BO(3) subunit 2) (Ubiquinol oxidase polypeptide II)Integral Inner Membrane, Inner Membrane LipoproteinB, EIM (predicted), Detected in IM FractionIntegral Membrane ProteinSRPSECyesyesN310.189TMH011.3494-32YCytoplasmicMembrane1019.49out/out
DPS_ECOLIP0ABT2
dps

pexB vtm

pexB vtmb0812 JW0797 DNA protection during starvation protein (EC 1.16.-.-)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmic (Experimental)yesyesN530.125CYT0-0.200913-00="0"Cytoplasmic1044.48
DNAB_ECOLIP0ACB0
dnaB

groP grpA

groP grpAb4052 JW4012 Replicative DNA helicase (EC 3.6.4.12)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFyesyesN30.105CYT0-0.200913-00="0"Cytoplasmic9.9781.48
DBHA_ECOLIP0ACF0
hupA
b4000 JW3964 DNA-binding protein HU-alpha (HU-2) (NS2)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN240.244CYT0-0.200913-00="0"Cytoplasmic9.2696.48
DBHB_ECOLIP0ACF4
hupB

hopD

hopDb0440 JW0430 DNA-binding protein HU-beta (HU-1) (NS1)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN270.114CYT0-0.200913-00="0"Cytoplasmic9.26
HNS_ECOLIP0ACF8
hns

bglY cur drdX hnsA msyA osmZ pilG topS

bglY cur drdX hnsA msyA osmZ pilG topSb1237 JW1225 DNA-binding protein H-NS (Histone-like protein HLP-II) (Protein B1) (Protein H1)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN190.173CYT0-0.200913-00="0"Cytoplasmic10103.34
STPA_ECOLIP0ACG1
stpA

hnsB

hnsBb2669 JW2644 DNA-binding protein stpA (H-NS homolog stpA)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN190.184CYT0-0.200913-00="0"Cytoplasmic9.2615.73
LRP_ECOLIP0ACJ0
lrp

alsB ihb livR oppI

alsB ihb livR oppIb0889 JW0872 Leucine-responsive regulatory proteinNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1IM (predicted)CytoplasmicyesyesN480.101CYT0-0.200913-00="0"Cytoplasmic9.9736.56
CRP_ECOLIP0ACJ8
crp

cap csm

cap csmb3357 JW5702 Catabolite gene activator (cAMP receptor protein) (cAMP regulatory protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicTFyesyesN240.105CYT0-0.200913-00="0"Cytoplasmic9.97
YGFZ_ECOLIP0ADE8
ygfZ

yzzW

yzzWb2898 JW2866 tRNA-modifying protein ygfZCytoplasmic, PeriplasmicA, GN/ACytoplasmic (Experimental)SEC, non classicalyesyesN310.252CYT0-0.200913-00="0"Unknown282.19
CPXR_ECOLIP0AE88
cpxR

yiiA

yiiAb3912 JW3883 Transcriptional regulatory protein CpxRNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN320.14CYT0-0.200913-00="0"Cytoplasmic10118.97
CSGG_ECOLIP0AEA2
csgG
b1037 JW1020 Curli production assembly/transport component csgGOuter Membrane Lipoprotein, Peripheral outer membrane protein facing the extra-cellular spaceI, F4N/AOuter membrane Lipoprotein (Experimental)CurliSECLOLyesyesY200.544SpII1512.9163Pos+2=L00YCytoplasmicMembrane9.8244.19
FLGM_ECOLIP0AEM4
flgM
b1071 JW1058 Negative regulator of flagellin synthesis (Anti-sigma-28 factor)Cytoplasmic, Extra-cellularA, XN/ACytoplasmicFlagellum FlayesyesN490.115CYT0-0.200913-00="0"Cytoplasmic9.2689.1
RRAB_ECOLIP0AF90
rraB

yjgD

yjgDb4255 JW4212 Uncharacterized protein yjgDNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN410.107CYT0-0.200913-00="0"Cytoplasmic8.96
NUSA_ECOLIP0AFF6
nusA
b3169 JW3138 Transcription elongation protein nusA (L factor) (N utilization substance protein A)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN410.104CYT0-0.200913-00="0"Cytoplasmic9.9799.46
OSMY_ECOLIP0AFH8
osmY
b4376 JW4338 Osmotically-inducible protein YPeriplasmic, Extra-cellularG, XN/APeriplasmic (Experimental)SECyesyesY290.787SpI2823.4143-00YPeriplasmic10108.86
PARC_ECOLIP0AFI2
parC
b3019 JW2987 DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase IV subunit A)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN180.118CYT0-0.200913-00="0"CytoplasmicMembrane1017.79
PHOB_ECOLIP0AFJ5
phoB
b0399 JW0389 Phosphate regulon transcriptional regulatory protein phoBNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN330.201CYT0-0.200913-00="0"Cytoplasmic9.97
YBBO_ECOLIP0AFP4
ybbO
b0493 JW0482 Uncharacterized oxidoreductase ybbO (EC 1.-.-.-)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmicnoyesN450.12CYT0-0.200913-01="0"Cytoplasmic9.97
RPOE_ECOLIP0AGB6
rpoE

sigE

sigEb2573 JW2557 RNA polymerase sigma-E factor (Sigma-24)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1Soluble IM FractionCytoplasmic (Experimental)yesyesN440.111CYT0-0.200913-00="0"Cytoplasmic10101.13
RCSB_ECOLIP0DMC7
rcsB
b2217 JW2205 Ankyrin repeat protein A (Ankyrin-like regulatory protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN660.117CYT0-0.200913-00="0"Cytoplasmic1090.28
RPOS_ECOLIP13445
rpoS

appR katF nur otsX sigS

appR katF nur otsX sigSb2741 JW5437 RNA polymerase sigma factor rpoS (Sigma-38)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN690.1CYT0-0.200913-00="0"Cytoplasmic1030.82
CHIA_ECOLIP13656
chiA

yheB

yheBb3338 JW3300 Probable bifunctional chitinase/lysozyme [Includes: Chitinase (EC 3.2.1.14); Lysozyme (EC 3.2.1.17)]Periplasmic, Extra-cellularG, XN/APeriplasmic (Experimental)SECT2SnoyesY250.672SpI2420.7505-00YPeriplasmic10
MUKB_ECOLIP22523
mukB
b0924 JW0907 Chromosome partition protein mukB (Structural maintenance of chromosome-related protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN460.13CYT0-0.200913-00="0"Cytoplasmic10
MUKE_ECOLIP22524
mukE

kicA ycbA

kicA ycbAb0923 JW0906 Chromosome partition protein mukE (Protein kicA)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN250.113CYT0-0.200913-00="0"Cytoplasmic9.9785.77
FECI_ECOLIP23484
fecI
b4293 JW4253 RNA polymerase sigma factor fecINucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicnoyesN230.11CYT0-0.200913-00="0"Cytoplasmic1016.07
CADC_ECOLIP23890
cadC
b4133 JW4094 Transcriptional activator CadCNucleoid, Integral Inner Membrane N, BIM (predicted)Membrane anchoredSRPSECnoyesN500.131CYT0-0.200913-11="0"CytoplasmicMembrane9.82
NADR_ECOLIP27278
nadR

nadI

nadIb4390 JW5800 Transcriptional regulator nadRNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN390.131CYT0-0.200913-00="0"Cytoplasmic8.9639.49
RODZ_ECOLIP27434
rodZ

yfgA

yfgAb2516 JW2500 Cytoskeleton protein rodZNucleoid, Integral Inner Membrane N, BIM (predicted)Membrane anchoredSECyesyesN350.243CYT0-0.200913-11="0"Unknown2
RNB_ECOLIP30850
rnb
b1286 JW1279 Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II) (RNase II) (Ribonuclease II)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN230.181CYT0-0.200913-00="0"Cytoplasmic1048.82
MLRA_ECOLIP33358
mlrA

yehV

yehVb2127 JW2115 HTH-type transcriptional regulator mlrA (MerR-like regulator A)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1IM (predicted)CytoplasmicyesyesN230.15CYT0-0.200913-01="0"Cytoplasmic9.26114.83
YHJD_ECOLIP37642
yhjD
b3522 JW3490 Inner membrane protein yhjDIntegral Inner Membrane, ribosomalB, rIM (predicted), Detected in IM FractionIntegral Membrane ProteinSRPSECyesyesN480.105CYT0-0.200913-65="0"CytoplasmicMembrane1013.56out/in
YIAD_ECOLIP37665
yiaD
b3552 JW5657 Inner membrane lipoprotein yiaDIntegral Inner Membrane, Inner Membrane LipoproteinB, EN/AOuter membrane Lipoprotein (Experimental)SECLOLyesyesY180.162SpII2021.9879Pos+2=T32YOuterMembrane1063.67out/out
ARFB_ECOLIP40711
arfB

yaeJ

yaeJb0191 JW0187 Peptidyl-tRNA hydrolase ArfBCytoplasmic, ribosomalA, rN/ACytoplasmicyesyesN250.116CYT0-0.200913-00="0"Unknown2108.57
YGJI_ECOLIP42590
ygjI
b3078 JW5512 Inner membrane transporter ygjINucleoid, Integral Inner Membrane N, BIM (predicted)Integral Membrane ProteinSRPSECyesyesN210.124TMH05.79735-1212="0"CytoplasmicMembrane10in/in
MLC_ECOLIP50456
mlc
b1594 JW1586 Protein mlc (Making large colonies protein)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1IM (predicted)CytoplasmicyesyesN430.124CYT0-0.200913-00="0"Cytoplasmic9.9718.29
CSGD_ECOLIP52106
csgD
b1040 JW1023 CsgBAC operon transcriptional regulatory proteinNucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN260.267CYT0-0.200913-00="0"Cytoplasmic9.2620.1
FLIK_ECOLIP52614
fliK

flaE flaR

flaE flaRb1943 JW1927 Flagellar hook-length control proteinCytoplasmic, Extra-cellularA, XN/ACytoplasmicflagellumFlagellumFlanoyesN470.186CYT0-0.200913-00="0"Extracellular1097.34
YBHD_ECOLIP52696
ybhD
b0768 JW5896 Phenylacetic acid degradation protein paaBNucleoid, Integral Inner Membrane N, BN/AMembrane anchoredSRPSECnoyesN240.184CYT0-0.200913-11="0"Cytoplasmic9.97
MUKF_ECOLIP60293
mukF

kicB

kicBb0922 JW0905 Chromosome partition protein mukF (Protein kicB)Nucleoid, Peripheral inner membrane protein facing the cytoplasmN, F1N/ACytoplasmicyesyesN370.127CYT0-0.200913-00="0"Cytoplasmic1076.09
SECM_ECOLIP62395
secM

srrA yacA

srrA yacAb0097 JW5007 Secretion monitorCytoplasmic, PeriplasmicA, GN/APeriplasmic (Experimental)SECSURAyesyesY380.527SpI3711.5151-10YCytoplasmic10
YQJD_ECOLIP64581
yqjD
b3098 JW3069 Uncharacterized protein yqjDIntegral Inner Membrane, ribosomalB, rIM (predicted), Detected in IM FractionMembrane anchoredSRPSECnoyesN330.103CYT0-0.200913-11="0"Unknown2
AAER_ECOLIP67662
aaeR

yhcS

yhcSb3243 JW3212 HTH-type transcriptional activator AaeRNucleoid, Integral Inner Membrane N, BIM (predicted)CytoplasmicSRPSECyesyesN240.199CYT0-0.200913-01="0"Cytoplasmic9.97
LPP_ECOLIP69776
lpp

mlpA mulI

mlpA mulIb1677 JW1667 Major outer membrane lipoprotein Lpp (Braun lipoprotein) (Murein-lipoprotein)Outer Membrane Lipoprotein, Peripheral outer membrane protein facing the extra-cellular spaceI, F4Soluble IM FractionOuter membrane Lipoprotein (Experimental)TFSECLOLyesyesY260.325SpII2026.7873Pos+2=S00YOuterMembrane1058.22
CLCB_ECOLIP76175
clcB

mriT ynfJ

mriT ynfJb1592 JW5263 Voltage-gated ClC-type chloride channel ClcBNucleoid, Integral Inner Membrane N, BIM (predicted)Integral Membrane ProteinSRPSECyesyesN210.254TMH010.4168-109YCytoplasmicMembrane1039.23out/in
HLYE_ECOLIP77335
hlyE

clyA hpr sheA ycgD

clyA hpr sheA ycgDb1182 JW5181 Hemolysin E, chromosomal (Cytotoxin ClyA) (Hemolysis-inducing protein) (Latent pore-forming 34 kDa hemolysin) (Silent hemolysin SheA)Periplasmic, Extra-cellularG, XN/ASecreted and released (Experimental)Uknown mechanismOMVnoyesN580.117CYT0-0.200913-10="0"Extracellular1062.94
YQEI_ECOLIQ46942
yqeI
b2847 JW2815 Uncharacterized J domain-containing protein djlBNucleoid, Integral Inner Membrane N, BIM (predicted)CytoplasmicSRPSECnoyesN510.158CYT0-0.200913-11="0"Cytoplasmic8.9615.39