STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Proteins with multiple sub-cellular topologies in E.coli K-12 (MG1655)  Export to Excel  Export to CSV  

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Proteins with multiple sub-cellular topologies in E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RCSB_ECOLI
P0DMC7
rcsB
b2217 JW2205
Ankyrin repeat protein A (Ankyrin-like regulatory protein)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
RPOS_ECOLI
P13445
rpoS

appR katF nur otsX sigS

b2741 JW5437
RNA polymerase sigma factor rpoS (Sigma-38)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
CHIA_ECOLI
P13656
chiA

yheB

b3338 JW3300
Probable bifunctional chitinase/lysozyme [Includes: Chitinase (EC 3.2.1.14); Lysozyme (EC 3.2.1.17)]
Periplasmic, Extra-cellular
G, X
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
T2S
no
yes
MUKB_ECOLI
P22523
mukB
b0924 JW0907
Chromosome partition protein mukB (Structural maintenance of chromosome-related protein)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm nucleoid
Cytoplasmic
 
 
 
 
 
yes
yes
MUKE_ECOLI
P22524
mukE

kicA ycbA

b0923 JW0906
Chromosome partition protein mukE (Protein kicA)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm nucleoid
Cytoplasmic
 
 
 
 
 
yes
yes
FECI_ECOLI
P23484
fecI
b4293 JW4253
RNA polymerase sigma factor fecI
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
CADC_ECOLI
P23890
cadC
b4133 JW4094
Transcriptional activator CadC
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell membrane | Single-pass membrane protein.
Membrane anchored
 
SRP
SEC
 
 
no
yes
NADR_ECOLI
P27278
nadR

nadI

b4390 JW5800
Transcriptional regulator nadR
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Membrane | Peripheral membrane proteinCytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RODZ_ECOLI
P27434
rodZ

yfgA

b2516 JW2500
Cytoskeleton protein rodZ
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Single-pass type II membrane protein
Membrane anchored
 
 
SEC
 
 
yes
yes
RNB_ECOLI
P30850
rnb
b1286 JW1279
Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II) (RNase II) (Ribonuclease II)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
MLRA_ECOLI
P33358
mlrA

yehV

b2127 JW2115
HTH-type transcriptional regulator mlrA (MerR-like regulator A)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
IM (predicted)
 
Cytoplasmic
 
 
 
 
 
yes
yes
YHJD_ECOLI
P37642
yhjD
b3522 JW3490
Inner membrane protein yhjD
Integral Inner Membrane, ribosomal
B, r
IM (predicted), Detected in IM Fraction
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
YIAD_ECOLI
P37665
yiaD
b3552 JW5657
Inner membrane lipoprotein yiaD
Integral Inner Membrane, Inner Membrane Lipoprotein
B, E
N/A
Cell inner membrane | Multi-pass membrane proteinCell inner membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
ARFB_ECOLI
P40711
arfB

yaeJ

b0191 JW0187
Peptidyl-tRNA hydrolase ArfB
Cytoplasmic, ribosomal
A, r
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
YGJI_ECOLI
P42590
ygjI
b3078 JW5512
Inner membrane transporter ygjI
Nucleoid, Integral Inner Membrane
N, B
IM (predicted)
Cell inner membrane | Multi-pass membrane protein
Integral Membrane Protein
 
SRP
SEC
 
 
yes
yes
MLC_ECOLI
P50456
mlc
b1594 JW1586
Protein mlc (Making large colonies protein)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
IM (predicted)
 
Cytoplasmic
 
 
 
 
 
yes
yes
CSGD_ECOLI
P52106
csgD
b1040 JW1023
CsgBAC operon transcriptional regulatory protein
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cell inner membrane | Peripheral membrane protein
Cytoplasmic
 
 
 
 
 
yes
yes
FLIK_ECOLI
P52614
fliK

flaE flaR

b1943 JW1927
Flagellar hook-length control protein
Cytoplasmic, Extra-cellular
A, X
N/A
 
Cytoplasmic
flagellum
 
Flagellum
 
Fla
no
yes
YBHD_ECOLI
P52696
ybhD
b0768 JW5896
Phenylacetic acid degradation protein paaB
Nucleoid, Integral Inner Membrane
N, B
N/A
 
Membrane anchored
 
SRP
SEC
 
 
no
yes
MUKF_ECOLI
P60293
mukF

kicB

b0922 JW0905
Chromosome partition protein mukF (Protein kicB)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm nucleoid
Cytoplasmic
 
 
 
 
 
yes
yes
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