STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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First Author
Publication Title
Pubmed ID
Referring Protein(s)
Fekkes P, de Wit JG, van der Wolk JP, Kimsey HH, Kumamoto CA, Driessen AJ
Preprotein transfer to the Escherichia coli translocase requires the co-operative binding of SecB and the signal sequence to SecA.
Mol Microbiol. 1998 Sep;29(5):1179-90.
Feng Y, Cronan JE
Overlapping repressor binding sites result in additive regulation of Escherichia coli FadH by FadR and ArcA.
J Bacteriol. 2010 Sep;192(17):4289-99. doi: 10.1128/JB.00516-10. Epub 2010 Jul 9.
Feng Y, Zhang H, Cronan JE
Profligate biotin synthesis in α-proteobacteria - a developing or degenerating regulatory system?
Mol Microbiol. 2013 Apr;88(1):77-92. doi: 10.1111/mmi.12170
Ferguson AD, Chakraborty R, Smith BS, Esser L, van der Helm D, Deisenhofer J
Structural basis of gating by the outer membrane transporter FecA.
Science. 2002 Mar 1;295(5560):1715-9
Ferguson AD, Hofmann E, Coulton JW, Diederichs K, Welte W
Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide.
Science. 1998 Dec 18;282(5397):2215-20
Ferris HU, Furukawa Y, Minamino T, Kroetz MB, Kihara M, Namba K, Macnab RM
FlhB regulates ordered export of flagellar components via autocleavage mechanism.
J Biol Chem. 2005 Dec 16;280(50):41236-42. Epub 2005 Oct 24.
Field RE, Romanus RJ
An improved gastrostomy technique.
IMJ Ill Med J. 1975 Dec;148(6):610-1.
Forest KT
The type II secretion arrowhead: the structure of GspI-GspJ-GspK.
Nat Struct Mol Biol. 2008 May;15(5):428-30. doi: 10.1038/nsmb0508-428.
Forst S, Delgado J, Inouye M
Phosphorylation of OmpR by the osmosensor EnvZ modulates expression of the ompF and ompC genes in Escherichia coli.
Proc Natl Acad Sci U S A. 1989 Aug;86(16):6052-6.
Fountoulakis M, Gasser R
Proteomic analysis of the cell envelope fraction of Escherichia coli.
Amino Acids. 2003;24(1-2):19-41
Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, Ocampo A, Rudd KE, Storz G
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs.
Mol Microbiol. 2008 Dec;70(5):1076-93. doi: 10.1111/j.1365-2958.2008.06394.x. Epub 2008 Aug 14.
Fraipont C, Alexeeva S, Wolf B, van der Ploeg R, Schloesser M, den Blaauwen T, Nguyen-Distèche M
The integral membrane FtsW protein and peptidoglycan synthase PBP3 form a subcomplex in Escherichia coli.
Microbiology. 2011 Jan;157(Pt 1):251-9. doi: 10.1099/mic.0.040071-0
Francetic O, Belin D, Badaut C, Pugsley AP
Expression of the endogenous type II secretion pathway in Escherichia coli leads to chitinase secretion.
EMBO J. 2000 Dec 15;19(24):6697-703.
Fu D, Libson A, Miercke LJ, Weitzman C, Nollert P, Krucinski J, Stroud RM
Structure of a glycerol-conducting channel and the basis for its selectivity.
Science. 2000 Oct 20;290(5491):481-6
Fujisawa M, Ito M, Krulwich TA
Three two-component transporters with channel-like properties have monovalent cation/proton antiport activity.
Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13289-94. Epub 2007 Aug 6.
Fulda M, Heinz E, Wolter FP
The fadD gene of Escherichia coli K12 is located close to rnd at 39.6 min of the chromosomal map and is a new member of the AMP-binding protein family.
Mol Gen Genet. 1994 Feb;242(3):241-9.
Futai M, Kimura H
Inducible membrane-bound L-lactate dehydrogenase from Escherichia coli. Purification and properties.
J Biol Chem. 1977 Aug 25;252(16):5820-7.
Gabor E, Gohler AK, Kosfeld A, Staab A, Kremling A, Jahreis K
The phosphoenolpyruvate-dependent glucose-phosphotransferase system from Escherichia coli K-12 as the center of a network regulating carbohydrate flux in the cell.
Eur J Cell Biol. 2011 Sep;90(9):711-20. doi: 10.1016/j.ejcb.2011.04.002. Epub 2011 May 28.
Galeazzi L, Bocci P, Amici A, Brunetti L, Ruggieri S, Romine M, Reed S, Osterman AL, Rodionov DA, Sorci L, Raffaelli N
Identification of nicotinamide mononucleotide deamidase of the bacterial pyridine nucleotide cycle reveals a novel broadly conserved amidohydrolase family.
J Biol Chem. 2011 Nov 18;286(46):40365-75. doi: 10.1074/jbc.M111.275818. Epub 2011 Sep 27.
Galli E, Gerdes K
Spatial resolution of two bacterial cell division proteins: ZapA recruits ZapB to the inner face of the Z-ring.
Mol Microbiol. 2010 Jun;76(6):1514-26. doi: 10.1111/j.1365-2958.2010.07183.x. Epub 2010 May 11.
Gassel M, Mollenkamp T, Puppe W, Altendorf K
The KdpF subunit is part of the K(+)-translocating Kdp complex of Escherichia coli and is responsible for stabilization of the complex in vitro.
J Biol Chem. 1999 Dec 31;274(53):37901-7.
Ge C, He C
Regulation of the type II secretion structural gene xpsE in Xanthomonas campestris Pathovar campestris by the global transcription regulator Clp.
Curr Microbiol. 2008 Feb;56(2):122-7. doi: 10.1007/s00284-007-9081-9. Epub 2008 Jan 3.
Gevaert K, Van Damme J, Goethals M, Thomas GR, Hoorelbeke B, Demol H, Martens L, Puype M, Staes A, Vandekerckhove J
Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins.
Mol Cell Proteomics. 2002 Nov;1(11):896-903.
Ghosh BK, Owens K, Pietri R, Peterkofsky A
Localization to the inner surface of the cytoplasmic membrane by immunoelectron microscopy of enzyme I of the phosphoenolpyruvate:sugar phosphotransferase system of Escherichia coli.
Proc Natl Acad Sci U S A. 1989 Feb;86(3):849-53.
Ghosh P, Ishihama A, Chatterji D
Escherichia coli RNA polymerase subunit omega and its N-terminal domain bind full-length beta' to facilitate incorporation into the alpha2beta subassembly.
Eur J Biochem. 2001 Sep;268(17):4621-7.
Gonnet P, Rudd KE, Lisacek F
Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12.
Proteomics. 2004 Jun;4(6):1597-613.
Grabau C, Chang YY, Cronan JE Jr
Lipid binding by Escherichia coli pyruvate oxidase is disrupted by small alterations of the carboxyl-terminal region.
J Biol Chem. 1989 Jul 25;264(21):12510-9
Grimm C, Evers A, Brock M, Maerker C, Klebe G, Buckel W, Reuter K
Crystal structure of 2-methylisocitrate lyase (PrpB) from Escherichia coli and modelling of its ligand bound active centre.
J Mol Biol. 2003 May 2;328(3):609-21
Gu R, Li M, Su CC, Long F, Routh MD, Yang F, McDermott G, Yu EW.
Conformational change of the AcrR regulator reveals a possible mechanism of induction.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jul 1;64(Pt 7):584-8. doi: 10.1107/S1744309108016035
Guest JR, Angier SJ, Russell GC
Structure, expression, and protein engineering of the pyruvate dehydrogenase complex of Escherichia coli.
Ann N Y Acad Sci. 1989;573:76-99.
Gulevich EP, Kuznetsova VN, Verbenko VN
[Role of constitutive and inducible repair in radiation resistance of Escherichia coli].
Genetika. 2011 Jul;47(7):879-89.
Gully D, Bouveret E
A protein network for phospholipid synthesis uncovered by a variant of the tandem affinity purification method in Escherichia coli.
Proteomics. 2006 Jan;6(1):282-93.
Gupta V, Sendra M, Naik SG, Chahal HK, Huynh BH, Outten FW, Fontecave M, Ollagnier de Choudens S
Native Escherichia coli SufA, coexpressed with SufBCDSE, purifies as a [2Fe-2S] protein and acts as an Fe-S transporter to Fe-S target enzymes.
J Am Chem Soc. 2009 May 6;131(17):6149-53. doi: 10.1021/ja807551e.
Gupte G, Woodward C, Stout V
Isolation and characterization of rcsB mutations that affect colanic acid capsule synthesis in Escherichia coli K-12.
J Bacteriol. 1997 Jul;179(13):4328-35.
Guse A, Stevenson CE, Kuper J, Buchanan G, Schwarz G, Giordano G, Magalon A, Mendel RR, Lawson DM, Palmer T
Biochemical and structural analysis of the molybdenum cofactor biosynthesis protein MobA.
J Biol Chem. 2003 Jul 11;278(28):25302-7
Guymer D, Maillard J, Sargent F
A genetic analysis of in vivo selenate reduction by Salmonella enterica serovar Typhimurium LT2 and Escherichia coli K12.
Arch Microbiol. 2009 Jun;191(6):519-28. doi: 10.1007/s00203-009-0478-7. Epub 2009 May 5.
Hagan CL, Kahne D
The reconstituted Escherichia coli Bam complex catalyzes multiple rounds of beta-barrel assembly.
Biochemistry. 2011 Sep 6;50(35):7444-6. doi: 10.1021/bi2010784. Epub 2011 Aug 11.
Hagan CL, Silhavy TJ, Kahne D
beta-Barrel membrane protein assembly by the Bam complex.
Annu Rev Biochem. 2011;80:189-210. doi: 10.1146/annurev-biochem-061408-144611.
Hajj Chehade M, Loiseau L, Lombard M, Pecqueur L, Ismail A, Smadja M, Golinelli-Pimpaneau B, Mellot-Draznieks C, Hamelin O, Aussel L, Kieffer-Jaquinod S, Labessan N, Barras F, Fontecave M, Pierrel F
ubiI, a new gene in Escherichia coli coenzyme Q biosynthesis, is involved in aerobic C5-hydroxylation.
J Biol Chem. 2013 Jul 5;288(27):20085-92. doi: 10.1074/jbc.M113.480368
Hakoshima T, Ichihara H
Structure of SixA, a histidine protein phosphatase of the ArcB histidine-containing phosphotransfer domain in Escherichia coli.
Methods Enzymol. 2007;422:288-304.
Hantash FM, Earhart CF
Membrane association of the Escherichia coli enterobactin synthase proteins EntB/G, EntE, and EntF.
J Bacteriol. 2000 Mar;182(6):1768-73.
Hardy SJ, Randall LL
A kinetic partitioning model of selective binding of nonnative proteins by the bacterial chaperone SecB.
Science. 1991 Jan 25;251(4992):439-43
Hartl FU, Lecker S, Schiebel E, Hendrick JP, Wickner W
The binding cascade of SecB to SecA to SecY/E mediates preprotein targeting to the E. coli plasma membrane.
Cell. 1990 Oct 19;63(2):269-79.
Hayashi I, Oyama T, Morikawa K
Structural and functional studies of MinD ATPase: implications for the molecular recognition of the bacterial cell division apparatus.
EMBO J. 2001 Apr 17;20(8):1819-28.
Hayden JD, Ades SE
The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli.
PLoS One. 2008 Feb 6;3(2):e1573. doi: 10.1371/journal.pone.0001573.
Heath RJ, Rock CO
Roles of the FabA and FabZ beta-hydroxyacyl-acyl carrier protein dehydratases in Escherichia coli fatty acid biosynthesis.
J Biol Chem. 1996 Nov 1;271(44):27795-801.
Heermann R, Weber A, Mayer B, Ott M, Hauser E, Gabriel G, Pirch T, Jung K
The universal stress protein UspC scaffolds the KdpD/KdpE signaling cascade of Escherichia coli under salt stress.
J Mol Biol. 2009 Feb 13;386(1):134-48. doi: 10.1016/j.jmb.2008.12.007. Epub 2008 Dec 11.
Hefti E, Bishop DH
The 5' sequences of VSV in vitro transcription product RNA (+/-SAM).
Biochem Biophys Res Commun. 1976 Jan 26;68(2):393-400.
Helmann JD
Anti-sigma factors.
Curr Opin Microbiol. 1999 Apr;2(2):135-41.
Hemm MR, Paul BJ, Miranda-Ríos J, Zhang A, Soltanzad N, Storz G
Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies.
J Bacteriol. 2010 Jan;192(1):46-58
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