STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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References


First Author
Publication Title
Year
Pubmed ID
Referring Protein(s)
Krehenbrink M, Edwards A, Downie JA
The superoxide dismutase SodA is targeted to the periplasm in a SecA-dependent manner by a novel mechanism.
Mol Microbiol. 2011 Oct;82(1):164-79. doi: 10.1111/j.1365-2958.2011.07803.x. Epub 2011 Sep 8.
Krone WJ, Koningstein G, de Graaf FK, Oudega B
Plasmid-determined cloacin DF13-susceptibility in Enterobacter cloacae and Klebsiella edwardsii; identification of the cloacin DF13/aerobactin outer membrane receptor proteins.
Antonie Van Leeuwenhoek. 1985;51(2):203-18.
Kruse T, Blagoev B, Løbner-Olesen A, Wachi M, Sasaki K, Iwai N, Mann M, Gerdes K
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
Genes Dev. 2006 Jan 1;20(1):113-24
Kumamoto CA, Beckwith J
Mutations in a new gene, secB, cause defective protein localization in Escherichia coli.
J Bacteriol. 1983 Apr;154(1):253-60
Kumar JK, Tabor S, Richardson CC
Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli.
Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3759-64. Epub 2004 Mar 2.
Landais S, Gounon P, Laurent-Winter C, Mazie JC, Danchin A, Barzu O, Sakamoto H
Immunochemical analysis of UMP kinase from Escherichia coli.
J Bacteriol. 1999 Feb;181(3):833-40.
Lasserre JP, Beyne E, Pyndiah S, Lapaillerie D, Claverol S, Bonneu M
A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis.
Electrophoresis. 2006 Aug;27(16):3306-21.
Laubacher ME, Ades SE
The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance.
J Bacteriol. 2008 Mar;190(6):2065-74. doi: 10.1128/JB.01740-07. Epub 2008 Jan 11.
 
Lazar SW, Kolter R
SurA assists the folding of Escherichia coli outer membrane proteins.
J Bacteriol. 1996 Mar;178(6):1770-3.
Lee CR, Cho SH, Yoon MJ, Peterkofsky A, Seok YJ
Escherichia coli enzyme IIANtr regulates the K+ transporter TrkA.
Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):4124-9. Epub 2007 Feb 8.
Lee EY, Bang JY, Park GW, Choi DS, Kang JS, Kim HJ, Park KS, Lee JO, Kim YK, Kwon KH, Kim KP, Gho YS
Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli.
Proteomics. 2007 Sep;7(17):3143-53.
 
Lee KH, Park JH, Kim TY, Kim HU, Lee SY
Systems metabolic engineering of Escherichia coli for L-threonine production.
Mol Syst Biol. 2007;3:149
Lee R, Aung-Htut MT, Kwik C, March PE
Expression phenotypes suggest that Der participates in a specific, high affinity interaction with membranes.
Protein Expr Purif. 2011 Jul;78(1):102-12. doi: 10.1016/j.pep.2011.02.009. Epub 2011 Feb 24.
Lemmin T, Soto CS, Clinthorne G, DeGrado WF, Dal Peraro M
Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations.
PLoS Comput Biol. 2013;9(1):e1002878. doi: 10.1371/journal.pcbi.1002878
Lessard IA, Walsh CT
VanX, a bacterial D-alanyl-D-alanine dipeptidase: resistance, immunity, or survival function?
Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11028-32
Li G, Young KD
Isolation and identification of new inner membrane-associated proteins that localize to cell poles in Escherichia coli.
Mol Microbiol. 2012 Apr;84(2):276-95. doi: 10.1111/j.1365-2958.2012.08021.x. Epub 2012 Mar 8.
Li Y, Stewart NK, Berger AJ, Vos S, Schoeffler AJ, Berger JM, Chait BT, Oakley MG
Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.
Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18832-7. doi: 10.1073/pnas.1008678107. Epub 2010 Oct 4.
Lippa AM, Goulian M
Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide.
PLoS Genet. 2009 Dec;5(12):e1000788. doi: 10.1371/journal.pgen.1000788
Locher KP, Lee AT, Rees DC
The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.
Science. 2002 May 10;296(5570):1091-8
Lopez-Campistrous A, Semchuk P, Burke L, Palmer-Stone T, Brokx SJ, Broderick G, Bottorff D, Bolch S, Weiner JH, Ellison MJ
Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth.
Mol Cell Proteomics. 2005 Aug;4(8):1205-9. Epub 2005 May 19.
Lubitz SP, Weiner JH
The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC).
Arch Biochem Biophys. 2003 Oct 15;418(2):205-16
Ludwig A, Völkerink G, von Rhein C, Bauer S, Maier E, Bergmann B, Goebel W, Benz R
Mutations affecting export and activity of cytolysin A from Escherichia coli.
J Bacteriol. 2010 Aug;192(15):4001-11. doi: 10.1128/JB.01283-09
Ludwig A, Völkerink G, von Rhein C, Bauer S, Maier E, Bergmann B, Goebel W, Benz R
Mutations affecting export and activity of cytolysin A from Escherichia coli.
J Bacteriol. 2010 Aug;192(15):4001-11
Luirink J, ten Hagen-Jongman CM, van der Weijden CC, Oudega B, High S, Dobberstein B, Kusters R
An alternative protein targeting pathway in Escherichia coli: studies on the role of FtsY.
EMBO J. 1994 May 15;13(10):2289-96.
Maciag A, Peano C, Pietrelli A, Egli T, De Bellis G, Landini P
In vitro transcription profiling of the sigmaS subunit of bacterial RNA polymerase: re-definition of the sigmaS regulon and identification of sigmaS-specific promoter sequence elements.
Nucleic Acids Res. 2011 Jul;39(13):5338-55. doi: 10.1093/nar/gkr129. Epub 2011 Mar 11.
 
MacLachlan PR, Kadam SK, Sanderson KE
Cloning, characterization, and DNA sequence of the rfaLK region for lipopolysaccharide synthesis in Salmonella typhimurium LT2.
J Bacteriol. 1991 Nov;173(22):7151-63.
Macnab RM
Type III flagellar protein export and flagellar assembly.
Biochim Biophys Acta. 2004 Nov 11;1694(1-3):207-17.
Maddalo G, Stenberg-Bruzell F, Gotzke H, Toddo S, Bjorkholm P, Eriksson H, Chovanec P, Genevaux P, Lehtio J, Ilag LL, Daley DO
Systematic analysis of native membrane protein complexes in Escherichia coli.
J Proteome Res. 2011 Apr 1;10(4):1848-59. doi: 10.1021/pr101105c. Epub 2011 Feb 18.
Maeda T, Sanchez-Torres V, Wood TK
Escherichia coli hydrogenase 3 is a reversible enzyme possessing hydrogen uptake and synthesis activities.
Appl Microbiol Biotechnol. 2007 Oct;76(5):1035-42. Epub 2007 Aug 1.
 
Mahren S, Enz S, Braun V
Functional interaction of region 4 of the extracytoplasmic function sigma factor FecI with the cytoplasmic portion of the FecR transmembrane protein of the Escherichia coli ferric citrate transport system.
J Bacteriol. 2002 Jul;184(13):3704-11.
Maillard J, Spronk CA, Buchanan G, Lyall V, Richardson DJ, Palmer T, Vuister GW, Sargent F
Structural diversity in twin-arginine signal peptide-binding proteins.
Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15641-6. Epub 2007 Sep 27.
Makise M, Mima S, Tsuchiya T, Mizushima T
Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids.
J Biol Chem. 2000 Feb 11;275(6):4513-8.
Malinverni JC, Werner J, Kim S, Sklar JG, Kahne D, Misra R, Silhavy TJ
YfiO stabilizes the YaeT complex and is essential for outer membrane protein assembly in Escherichia coli.
Mol Microbiol. 2006 Jul;61(1):151-64.
Maneewannakul S, Maneewannakul K, Ippen-Ihler K
Characterization, localization, and sequence of F transfer region products: the pilus assembly gene product TraW and a new product, TrbI.
J Bacteriol. 1992 Sep;174(17):5567-74.
Manning PA, Beutin L, Achtman M
Outer membrane of Escherichia coli: properties of the F sex factor traT protein which is involved in surface exclusion.
J Bacteriol. 1980 Apr;142(1):285-94
Marani P, Wagner S, Baars L, Genevaux P, de Gier JW, Nilsson I, Casadio R, von Heijne G
New Escherichia coli outer membrane proteins identified through prediction and experimental verification.
Protein Sci. 2006 Apr;15(4):884-9
March PE, Inouye M
GTP-binding membrane protein of Escherichia coli with sequence homology to initiation factor 2 and elongation factors Tu and G.
Proc Natl Acad Sci U S A. 1985 Nov;82(22):7500-4.
Martinez-Hackert E, Hendrickson WA
Promiscuous substrate recognition in folding and assembly activities of the trigger factor chaperone.
Cell. 2009 Sep 4;138(5):923-34. doi: 10.1016/j.cell.2009.07.044.
Matsubara M, Mizuno T
The SixA phospho-histidine phosphatase modulates the ArcB phosphorelay signal transduction in Escherichia coli.
FEBS Lett. 2000 Mar 24;470(2):118-24.
Matzanke BF, Anemuller S, Schunemann V, Trautwein AX, Hantke K
FhuF, part of a siderophore-reductase system.
Biochemistry. 2004 Feb 10;43(5):1386-92.
Mazur O, Zimmer J
Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ.
J Biol Chem. 2011 May 20;286(20):17601-6. doi: 10.1074/jbc.M111.227660. Epub 2011 Mar 25.
 
Meganathan R
Ubiquinone biosynthesis in microorganisms.
FEMS Microbiol Lett. 2001 Sep 25;203(2):131-9.
Meijberg W, Schuurman-Wolters GK, Robillard GT
Thermodynamic evidence for conformational coupling between the B and C domains of the mannitol transporter of escherichia coli, enzyme IImtl.
J Biol Chem. 1998 Apr 3;273(14):7949-56.
Metzger LE 4th, Raetz CR
An alternative route for UDP-diacylglucosamine hydrolysis in bacterial lipid A biosynthesis.
Biochemistry. 2010 Aug 10;49(31):6715-26. doi: 10.1021/bi1008744.
Metzger LE 4th, Raetz CR.
Purification and characterization of the lipid A disaccharide synthase (LpxB) from Escherichia coli, a peripheral membrane protein.
Biochemistry. 2009
Minami N, Yasuda T, Ishii Y, Fujimori K, Amano F
Regulatory role of cardiolipin in the activity of an ATP-dependent protease, Lon, from Escherichia coli.
J Biochem. 2011 May;149(5):519-27. doi: 10.1093/jb/mvr036. Epub 2011 Mar 23.
Minamino T, Kinoshita M, Hara N, Takeuchi S, Hida A, Koya S, Glenwright H, Imada K, Aldridge PD, Namba K
Interaction of a bacterial flagellar chaperone FlgN with FlhA is required for efficient export of its cognate substrates.
Mol Microbiol. 2012 Feb;83(4):775-88. doi: 10.1111/j.1365-2958.2011.07964.x. Epub 2012 Jan 11.
Minamino T, Yamaguchi S, Macnab RM
Interaction between FliE and FlgB, a proximal rod component of the flagellar basal body of Salmonella.
J Bacteriol. 2000 Jun;182(11):3029-36.
Miot M, Betton JM
Protein quality control in the bacterial periplasm.
Microb Cell Fact. 2004 May 7;3(1):4.
Misra R, Miao Y
Molecular analysis of asmA, a locus identified as the suppressor of OmpF assembly mutants of Escherichia coli K-12.
Mol Microbiol. 1995 May;16(4):779-88.
 
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