STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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First Author
Publication Title
Pubmed ID
Referring Protein(s)
Missiakas D, Mayer MP, Lemaire M, Georgopoulos C, Raina S
Modulation of the Escherichia coli sigmaE (RpoE) heat-shock transcription-factor activity by the RseA, RseB and RseC proteins.
Mol Microbiol. 1997 Apr;24(2):355-71.
Missiakas D, Schwager F, Raina S
Identification and characterization of a new disulfide isomerase-like protein (DsbD) in Escherichia coli.
EMBO J. 1995 Jul 17;14(14):3415-24
Mitchell KA, Szabo G, de S Otero A
Direct binding of cytosolic NDP kinases to membrane lipids is regulated by nucleotides.
Biochim Biophys Acta. 2009 Mar;1793(3):469-76. doi: 10.1016/j.bbamcr.2008.12.009. Epub 2008 Dec 25.
Miyamoto S, Tokuda H
Diverse effects of phospholipids on lipoprotein sorting and ATP hydrolysis by the ABC transporter LolCDE complex.
Biochim Biophys Acta. 2007 Jul;1768(7):1848-54. Epub 2007 Apr 14.
Molloy MP, Herbert BR, Slade MB, Rabilloud T, Nouwens AS, Williams KL, Gooley AA.
Proteomic analysis of the Escherichia coli outer membrane.
Eur J Biochem. 2000 May;267(10):2871-81
Mouslim C, Latifi T, Groisman EA
Signal-dependent requirement for the co-activator protein RcsA in transcription of the RcsB-regulated ugd gene.
J Biol Chem. 2003 Dec 12;278(50):50588-95. Epub 2003 Sep 26.
Mueller M, Grauschopf U, Maier T, Glockshuber R, Ban N
The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism.
Nature. 2009 Jun 4;459(7247):726-30. doi: 10.1038/nature08026.
Murakami S, Nakashima R, Yamashita E, Yamaguchi A
Crystal structure of bacterial multidrug efflux transporter AcrB.
Nature. 2002 Oct 10;419(6907):587-93
Murashko ON, Kaberdin VR, Lin-Chao S
Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity.
Proc Natl Acad Sci U S A. 2012 May 1;109(18):7019-24. doi: 10.1073/pnas.1120181109. Epub 2012 Apr 16.
Murphy GE, Jensen GJ
Electron cryotomography of the E. coli pyruvate and 2-oxoglutarate dehydrogenase complexes.
Structure. 2005 Dec;13(12):1765-73.
Nagakubo S, Nishino K, Hirata T, Yamaguchi A
The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC.
J Bacteriol. 2002 Aug;184(15):4161-7.
Nenninger AA, Robinson LS, Hammer ND, Epstein EA, Badtke MP, Hultgren SJ, Chapman MR
CsgE is a curli secretion specificity factor that prevents amyloid fibre aggregation.
Mol Microbiol. 2011 Jul;81(2):486-99. doi: 10.1111/j.1365-2958.2011.07706.x. Epub 2011 Jun 7.
Nenninger AA, Robinson LS, Hultgren SJ
Localized and efficient curli nucleation requires the chaperone-like amyloid assembly protein CsgF.
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):900-5. doi: 10.1073/pnas.0812143106
Nenninger AA, Robinson LS, Hultgren SJ
Localized and efficient curli nucleation requires the chaperone-like amyloid assembly protein CsgF.
Proc Natl Acad Sci U S A. 2009 Jan 20;106(3):900-5
Neumann M, Mittelstadt G, Iobbi-Nivol C, Saggu M, Lendzian F, Hildebrandt P, Leimkuhler S
A periplasmic aldehyde oxidoreductase represents the first molybdopterin cytosine dinucleotide cofactor containing molybdo-flavoenzyme from Escherichia coli.
FEBS J. 2009 May;276(10):2762-74. doi: 10.1111/j.1742-4658.2009.07000.x. Epub 2009 Apr 1.
Neumann P, Weidner A, Pech A, Stubbs MT, Tittmann K
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.
Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17390-5. doi: 10.1073/pnas.0805027105. Epub 2008 Nov 6.
Neuwald AF, Stauffer GV
An Escherichia coli membrane protein with a unique signal sequence.
Gene. 1989 Oct 30;82(2):219-28.
Nishimune T, Ito S, Abe M, Kimoto M, Hayashi R
Nucleoside-triphosphatase and hydrolysis of thiamin triphosphate in Escherichia coli.
Biochim Biophys Acta. 1987 Jan 20;923(1):74-82.
Nishino K, Hsu FF, Turk J, Cromie MJ, Wosten MM, Groisman EA
Identification of the lipopolysaccharide modifications controlled by the Salmonella PmrA/PmrB system mediating resistance to Fe(III) and Al(III).
Mol Microbiol. 2006 Aug;61(3):645-54. Epub 2006 Jun 27.
Nobelmann B, Lengeler JW
Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism.
J Bacteriol. 1996 Dec;178(23):6790-5.
O'Daniel PI, Zajicek J, Zhang W, Shi Q, Fisher JF, Mobashery S
Elucidation of the structure of the membrane anchor of penicillin-binding protein 5 of Escherichia coli.
J Am Chem Soc. 2010 Mar 31;132(12):4110-8. doi: 10.1021/ja9094445.
Ogasawara H, Yamamoto K, Ishihama A
Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli.
FEMS Microbiol Lett. 2010 Nov;312(2):160-8. doi: 10.1111/j.1574-6968.2010.02112.x. Epub 2010 Sep 27.
Ogino T, Matsubara M, Kato N, Nakamura Y, Mizuno T
An Escherichia coli protein that exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His-Asp phosphorelay.
Mol Microbiol. 1998 Feb;27(3):573-85.
Ohniwa RL, Ushijima Y, Saito S, Morikawa K
Proteomic analyses of nucleoid-associated proteins in Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis, and Staphylococcus aureus.
PLoS One. 2011 Apr 26;6(4):e19172. doi: 10.1371/journal.pone.0019172.
Olsiewski PJ, Kaczorowski GJ, Walsh C
Purification and properties of D-amino acid dehydrogenase, an inducible membrane-bound iron-sulfur flavoenzyme from Escherichia coli B.
J Biol Chem. 1980 May 25;255(10):4487-94.
Ostrovsky de Spicer P, Maloy S
PutA protein, a membrane-associated flavin dehydrogenase, acts as a redox-dependent transcriptional regulator.
Proc Natl Acad Sci U S A. 1993 May 1;90(9):4295-8.
Outten FW, Wood MJ, Munoz FM, Storz G
The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe-S cluster assembly in Escherichia coli.
J Biol Chem. 2003 Nov 14;278(46):45713-9. Epub 2003 Aug 26.
Palchevskiy V, Finkel SE
Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient.
J Bacteriol. 2006 Jun;188(11):3902-10.
Pan JY, Li H, Ma Y, Chen P, Zhao P, Wang SY, Peng XX
Complexome of Escherichia coli envelope proteins under normal physiological conditions.
J Proteome Res. 2010 Jul 2;9(7):3730-40. doi: 10.1021/pr100301f.
Papadopoulos E, Collet JF, Vukojevic V, Billeter M, Holmgren A, Graslund A, Vlamis-Gardikas A
Solution structure and biophysical properties of MqsA, a Zn-containing antitoxin from Escherichia coli.
Biochim Biophys Acta. 2012 Dec;1824(12):1401-8. doi: 10.1016/j.bbapap.2012.06.016. Epub 2012 Jul 10.
Papanastasiou M, Orfanoudaki G, Koukaki M, Kountourakis N, Sardis MF, Aivaliotis M, Karamanou S, Economou A.
The Escherichia coli peripheral inner membrane proteome.
Mol Cell Proteomics. 2013
Pape HC, Mager R
Nitric oxide controls oscillatory activity in thalamocortical neurons.
Neuron. 1992 Sep;9(3):441-8.
Park JT, Uehara T
How bacteria consume their own exoskeletons (turnover and recycling of cell wall peptidoglycan).
Microbiol Mol Biol Rev. 2008 Jun;72(2):211-27, table of contents. doi: 10.1128/MMBR.00027-07.
Park SY, Cromie MJ, Lee EJ, Groisman EA
A bacterial mRNA leader that employs different mechanisms to sense disparate intracellular signals.
Cell. 2010 Sep 3;142(5):737-48
Park YW, Yun HD
Cloning of the Escherichia coli endo-1,4-D-glucanase gene and identification of its product.
Mol Gen Genet. 1999 Mar;261(2):236-41.
Parlitz R, Eitan A, Stjepanovic G, Bahari L, Bange G, Bibi E, Sinning I
Escherichia coli signal recognition particle receptor FtsY contains an essential and autonomous membrane-binding amphipathic helix.
J Biol Chem. 2007 Nov 2;282(44):32176-84
Patel GJ, Kleinschmidt JH
The lipid bilayer-inserted membrane protein BamA of Escherichia coli facilitates insertion and folding of outer membrane protein A from its complex with Skp.
Biochemistry. 2013 Jun 11;52(23):3974-86. doi: 10.1021/bi400103t
Patzer SI, Hantke K
SufS is a NifS-like protein, and SufD is necessary for stability of the [2Fe-2S] FhuF protein in Escherichia coli.
J Bacteriol. 1999 May;181(10):3307-9.
Paul K, Nieto V, Carlquist WC, Blair DF, Harshey RM
The c-di-GMP binding protein YcgR controls flagellar motor direction and speed to affect chemotaxis by a "backstop brake" mechanism.
Mol Cell. 2010 Apr 9;38(1):128-39. doi: 10.1016/j.molcel.2010.03.001. Epub 2010 Mar 25.
Pautsch A, Schulz GE
Structure of the outer membrane protein A transmembrane domain.
Nat Struct Biol. 1998 Nov;5(11):1013-7
Pech M, Karim Z, Yamamoto H, Kitakawa M, Qin Y, Nierhaus KH
Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations.
Proc Natl Acad Sci U S A. 2011 Feb 22;108(8):3199-203. doi: 10.1073/pnas.1012994108. Epub 2011 Feb 7.
Petrushenko ZM, Lai CH, Rybenkov VV
Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB.
J Biol Chem. 2006 Nov 10;281(45):34208-17. Epub 2006 Sep 18.
Phoenix DA, Peters SE, Ramzan MA, Pratt JM
Analysis of the membrane-anchoring properties of the putative amphiphilic alpha-helical anchor at the C-terminus of Escherichia coli PBP 6.
Microbiology. 1994 Jan;140 ( Pt 1):73-7.
Phoenix DA, Pratt JM
pH-induced insertion of the amphiphilic alpha-helical anchor of Escherichia coli penicillin-binding protein 5.
Eur J Biochem. 1990 Jun 20;190(2):365-9.
Phue JN, Lee SJ, Kaufman JB, Negrete A, Shiloach J
Acetate accumulation through alternative metabolic pathways in ackA (-) pta (-) poxB (-) triple mutant in E. coli B (BL21).
Biotechnol Lett. 2010 Dec;32(12):1897-903. doi: 10.1007/s10529-010-0369-7
Pichoff S, Vollrath B, Touriol C, Bouche JP
Deletion analysis of gene minE which encodes the topological specificity factor of cell division in Escherichia coli.
Mol Microbiol. 1995 Oct;18(2):321-9.
Potluri L, Karczmarek A, Verheul J, Piette A, Wilkin JM, Werth N, Banzhaf M, Vollmer W, Young KD, Nguyen-Disteche M, den Blaauwen T
Septal and lateral wall localization of PBP5, the major D,D-carboxypeptidase of Escherichia coli, requires substrate recognition and membrane attachment.
Mol Microbiol. 2010 Jul;77(2):300-23. doi: 10.1111/j.1365-2958.2010.07205.x. Epub 2010 Jun 7.
Pradel N, Ye C, Wu LF
A cleavable signal peptide is required for the full function of the polytopic inner membrane protein FliP of Escherichia coli.
Biochem Biophys Res Commun. 2004 Jul 9;319(4):1276-80
Prehna G, Zhang G, Gong X, Duszyk M, Okon M, McIntosh LP, Weiner JH, Strynadka NC
A protein export pathway involving Escherichia coli porins.
Structure. 2012 Jul 3;20(7):1154-66. doi: 10.1016/j.str.2012.04.014. Epub 2012 May 31.
Prehna G, Zhang G, Gong X, Duszyk M, Okon M, McIntosh LP, Weiner JH, Strynadka NC
A protein export pathway involving Escherichia coli porins.
Structure. 2012 Jul 3;20(7):1154-66. doi: 10.1016/j.str.2012.04.014. Epub 2012 May 31.
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