STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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References


First Author
Publication Title
Year
Pubmed ID
Referring Protein(s)
Preumont A, Snoussi K, Stroobant V, Collet JF, Van Schaftingen E
Molecular identification of pseudouridine-metabolizing enzymes.
J Biol Chem. 2008 Sep 12;283(37):25238-46. doi: 10.1074/jbc.M804122200. Epub 2008 Jun 30.
Prieto AI, Hernandez SB, Cota I, Pucciarelli MG, Orlov Y, Ramos-Morales F, Garcia-del Portillo F, Casadesus J
Roles of the outer membrane protein AsmA of Salmonella enterica in the control of marRAB expression and invasion of epithelial cells.
J Bacteriol. 2009 Jun;191(11):3615-22. doi: 10.1128/JB.01592-08. Epub 2009 Apr 3.
Prud'homme-Genereux A, Beran RK, Iost I, Ramey CS, Mackie GA, Simons RW
Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'.
Mol Microbiol. 2004 Dec;54(5):1409-21.
Punginelli C, Ize B, Stanley NR, Stewart V, Sawers G, Berks BC, Palmer T
mRNA secondary structure modulates translation of Tat-dependent formate dehydrogenase N.
J Bacteriol. 2004 Sep;186(18):6311-5.
Py B, Higgins CF, Krisch HM, Carpousis AJ
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome.
Nature. 1996 May 9;381(6578):169-72.
Quay SC, Oxender DL
Regulation of branched-chain amino acid transport in Escherichia coli.
J Bacteriol. 1976 Sep;127(3):1225-38
Raffaelli N, Lorenzi T, Mariani PL, Emanuelli M, Amici A, Ruggieri S, Magni G
The Escherichia coli NadR regulator is endowed with nicotinamide mononucleotide adenylyltransferase activity.
J Bacteriol. 1999 Sep;181(17):5509-11.
Rafferty NS, Scholz DL, Goldberg M, Lewyckyj M
Immunocytochemical evidence for an actin-myosin system in lens epithelial cells.
Exp Eye Res. 1990 Nov;51(5):591-600.
Rajapandi T, Dolan KM, Oliver DB
The first gene in the Escherichia coli secA operon, gene X, encodes a nonessential secretory protein.
J Bacteriol. 1991 Nov;173(22):7092-7
Ramasamy SK, Clemons WM Jr
Structure of the twin-arginine signal-binding protein DmsD from Escherichia coli.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Aug 1;65(Pt 8):746-50. doi: 10.1107/S1744309109023811. Epub 2009 Jul 21.
Rangachari K, Davis CT, Eccleston JF, Hirst EM, Saldanha JW, Strath M, Wilson RJ
SufC hydrolyzes ATP and interacts with SufB from Thermotoga maritima.
FEBS Lett. 2002 Mar 13;514(2-3):225-8.
Rauschmeier M, Schüppel V, Tetsch L, Jung K
New insights into the interplay between the lysine transporter LysP and the pH sensor CadC in Escherichia coli.
J Mol Biol. 2014 Jan 9;426(1):215-29. doi: 10.1016/j.jmb.2013.09.017
Rea D, Hovington R, Rakus JF, Gerlt JA, Fülöp V, Bugg TD, Roper DI
Crystal structure and functional assignment of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12.
Biochemistry. 2008 Sep 23;47(38):9955-65. doi: 10.1021/bi800943g
Reid SJ, Abratt VR
Sucrose utilisation in bacteria: genetic organisation and regulation.
Appl Microbiol Biotechnol. 2005 May;67(3):312-21. Epub 2005 Jan 20.
Reizer J, Reizer A, Saier MH Jr
Novel phosphotransferase system genes revealed by bacterial genome analysis--a gene cluster encoding a unique Enzyme I and the proteins of a fructose-like permease system.
Microbiology. 1995 Apr;141 ( Pt 4):961-71.
Reizer J, Reizer A, Saier MH Jr
A functional superfamily of sodium/solute symporters.
Biochim Biophys Acta. 1994 Jun 29;1197(2):133-66.
Remaut H, Waksman G
Structural biology of bacterial pathogenesis.
Curr Opin Struct Biol. 2004 Apr;14(2):161-70.
Ricagno S, Jonsson S, Richards N, Lindqvist Y
Formyl-CoA transferase encloses the CoA binding site at the interface of an interlocked dimer.
EMBO J. 2003 Jul 1;22(13):3210-9.
Rida S, Caillet J, Alix JH
Amplification of a novel gene, sanA, abolishes a vancomycin-sensitive defect in Escherichia coli.
J Bacteriol. 1996 Jan;178(1):94-102.
Rife CL, Parsons JF, Xiao G, Gilliland GL, Armstrong RN
Conserved structural elements in glutathione transferase homologues encoded in the genome of Escherichia coli.
Proteins. 2003 Dec 1;53(4):777-82.
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.
Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.
Robinson LS, Ashman EM, Hultgren SJ, Chapman MR
Secretion of curli fibre subunits is mediated by the outer membrane-localized CsgG protein.
Mol Microbiol. 2006 Feb;59(3):870-81
Rodrigue A, Boxer DH, Mandrand-Berthelot MA, Wu LF
Requirement for nickel of the transmembrane translocation of NiFe-hydrogenase 2 in Escherichia coli.
FEBS Lett. 1996 Aug 26;392(2):81-6
Rodrigue A, Chanal A, Beck K, Müller M, Wu LF
Co-translocation of a periplasmic enzyme complex by a hitchhiker mechanism through the bacterial tat pathway.
J Biol Chem. 1999 May 7;274(19):13223-8
Ross P, Mayer R, Benziman M
Cellulose biosynthesis and function in bacteria.
Microbiol Rev. 1991 Mar;55(1):35-58.
Rothe FM, Bahr T, Stülke J, Rak B, Görke B
Activation of Escherichia coli antiterminator BglG requires its phosphorylation.
Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15906-11
Rowland SL, Fu X, Sayed MA, Zhang Y, Cook WR, Rothfield LI
Membrane redistribution of the Escherichia coli MinD protein induced by MinE.
J Bacteriol. 2000 Feb;182(3):613-9.
 
Rueggeberg KG, Toba FA, Thompson MG, Campbell BR, Hay AG
A Q-like transcription factor regulates biofilm development in Escherichia coli by controlling expression of the DLP12 lysis cassette.
Microbiology. 2013 Apr;159(Pt 4):691-700. doi: 10.1099/mic.0.064741-0
Salje J, van den Ent F, de Boer P, Lowe J
Direct membrane binding by bacterial actin MreB.
Mol Cell. 2011 Aug 5;43(3):478-87. doi: 10.1016/j.molcel.2011.07.008.
Samsonov VV, Samsonov VV, Sineoky SP
DcrA and dcrB Escherichia coli genes can control DNA injection by phages specific for BtuB and FhuA receptors.
Res Microbiol. 2002 Dec;153(10):639-46.
San Millan JL, Boyd D, Dalbey R, Wickner W, Beckwith J
Use of phoA fusions to study the topology of the Escherichia coli inner membrane protein leader peptidase.
J Bacteriol. 1989 Oct;171(10):5536-41
Sanchez-Romero MA, Lee DJ, Sanchez-Moran E, Busby SJ
Location and dynamics of an active promoter in Escherichia coli K-12.
Biochem J. 2012 Jan 1;441(1):481-5. doi: 10.1042/BJ20111258.
Sanders AN, Pavelka MS.
Phenotypic analysis of Eschericia coli mutants lacking L,D-transpeptidases.
Microbiology. 2013 Sep;159(Pt 9):1842-52. doi: 10.1099/mic.0.069211-0
Sankaran K, Wu HC
Lipid modification of bacterial prolipoprotein. Transfer of diacylglyceryl moiety from phosphatidylglycerol.
J Biol Chem. 1994 Aug 5;269(31):19701-6
Saraceni-Richards CA, Jacobson GR
Subunit and amino acid interactions in the Escherichia coli mannitol permease: a functional complementation study of coexpressed mutant permease proteins.
J Bacteriol. 1997 Aug;179(16):5171-7.
Sargent F, Ballantine SP, Rugman PA, Palmer T, Boxer DH
Reassignment of the gene encoding the Escherichia coli hydrogenase 2 small subunit--identification of a soluble precursor of the small subunit in a hypB mutant.
Eur J Biochem. 1998 Aug 1;255(3):746-54
Sauer U, Canonaco F, Heri S, Perrenoud A, Fischer E
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli.
J Biol Chem. 2004 Feb 20;279(8):6613-9. Epub 2003 Dec 3.
Sauter M, Bohm R, Bock A
Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli.
Mol Microbiol. 1992 Jun;6(11):1523-32.
Savage DF, Egea PF, Robles-Colmenares Y, O'Connell JD 3rd, Stroud RM
Architecture and selectivity in aquaporins: 2.5 a X-ray structure of aquaporin Z.
PLoS Biol. 2003 Dec;1(3):E72
Schandel KA, Maneewannakul S, Ippen-Ihler K, Webster RE
A traC mutant that retains sensitivity to f1 bacteriophage but lacks F pili.
J Bacteriol. 1987 Jul;169(7):3151-9.
Schierle CF, Berkmen M, Huber D, Kumamoto C, Boyd D, Beckwith J
The DsbA signal sequence directs efficient, cotranslational export of passenger proteins to the Escherichia coli periplasm via the signal recognition particle pathway.
J Bacteriol. 2003 Oct;185(19):5706-13
Schirmer T, Keller TA, Wang YF, Rosenbusch JP
Structural basis for sugar translocation through maltoporin channels at 3.1 A resolution.
Science. 1995 Jan 27;267(5197):512-4
Schmidt H, Hansen G, Singh S, Hanuszkiewicz A, Lindner B, Fukase K, Woodard RW, Holst O, Hilgenfeld R, Mamat U, Mesters JR
Structural and mechanistic analysis of the membrane-embedded glycosyltransferase WaaA required for lipopolysaccharide synthesis.
Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6253-8
Schmidt O, Schuenemann VJ, Hand NJ, Silhavy TJ, Martin J, Lupas AN, Djuranovic S
prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli.
J Mol Biol. 2007 Sep 28;372(4):894-905. Epub 2007 Jul 21.
Schryvers A, Lohmeier E, Weiner JH
Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli.
J Biol Chem. 1978 Feb 10;253(3):783-8.
Schumann U, Edwards MD, Rasmussen T, Bartlett W, van West P, Booth IR
YbdG in Escherichia coli is a threshold-setting mechanosensitive channel with MscM activity.
Proc Natl Acad Sci U S A. 2010 Jul 13;107(28):12664-9. doi: 10.1073/pnas.1001405107. Epub 2010 Jun 28.
Scott JD, Ludwig RA
Azorhizobium caulinodans electron-transferring flavoprotein N electrochemically couples pyruvate dehydrogenase complex activity to N2 fixation.
Microbiology. 2004 Jan;150(Pt 1):117-26.
Scotti PA, Urbanus ML, Brunner J, de Gier JW, von Heijne G, van der Does C, Driessen AJ, Oudega B, Luirink J
YidC, the Escherichia coli homologue of mitochondrial Oxa1p, is a component of the Sec translocase.
EMBO J. 2000 Feb 15;19(4):542-9.
Seiffer D, Klein JR, Plapp R
EnvC, a new lipoprotein of the cytoplasmic membrane of Escherichia coli.
FEMS Microbiol Lett. 1993 Mar 1;107(2-3):175-8.
Selkrig J, Mosbahi K, Webb CT, Belousoff MJ, Perry AJ, Wells TJ, Morris F, Leyton DL, Totsika M, Phan MD, Celik N, Kelly M, Oates C, Hartland EL, Robins-Browne RM, Ramarathinam SH, Purcell AW, Schembri MA, Strugnell RA, Henderson IR, Walker D, Lithgow T
Discovery of an archetypal protein transport system in bacterial outer membranes.
Nat Struct Mol Biol. 2012 Apr 1;19(5):506-10, S1. doi: 10.1038/nsmb.2261
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