STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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References


First Author
Publication Title
Year
Pubmed ID
Referring Protein(s)
Shajani Z, Sykes MT, Williamson JR
Assembly of bacterial ribosomes.
Annu Rev Biochem. 2011;80:501-26. doi: 10.1146/annurev-biochem-062608-160432.
Shao Z, Newman EB
Sequencing and characterization of the sdaB gene from Escherichia coli K-12.
Eur J Biochem. 1993 Mar 15;212(3):777-84.
Shiomi D, Margolin W
Compensation for the loss of the conserved membrane targeting sequence of FtsA provides new insights into its function.
Mol Microbiol. 2008 Feb;67(3):558-69. doi: 10.1111/j.1365-2958.2007.06085.x.
Shiomi D, Sakai M, Niki H
Determination of bacterial rod shape by a novel cytoskeletal membrane protein.
EMBO J. 2008 Dec 3;27(23):3081-91. doi: 10.1038/emboj.2008.234. Epub 2008 Nov 13.
Shiraishi K, Imai Y, Yoshizaki S, Tadaki T, Ogata Y, Ikeda H
The role of UvrD in RecET-mediated illegitimate recombination in Escherichia coli.
Genes Genet Syst. 2006 Aug;81(4):291-7.
Shiue SJ, Kao KM, Leu WM, Chen LY, Chan NL, Hu NT
XpsE oligomerization triggered by ATP binding, not hydrolysis, leads to its association with XpsL.
EMBO J. 2006 Apr 5;25(7):1426-35. Epub 2006 Mar 9.
Sijbrandi R, Urbanus ML, ten Hagen-Jongman CM, Bernstein HD, Oudega B, Otto BR, Luirink J
Signal recognition particle (SRP)-mediated targeting and Sec-dependent translocation of an extracellular Escherichia coli protein.
J Biol Chem. 2003 Feb 14;278(7):4654-9
Sklar JG, Wu T, Kahne D, Silhavy TJ
Defining the roles of the periplasmic chaperones SurA, Skp, and DegP in Escherichia coli.
Genes Dev. 2007 Oct 1;21(19):2473-84.
Slater S, Wold S, Lu M, Boye E, Skarstad K, Kleckner N
E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration.
Cell. 1995 Sep 22;82(6):927-36.
Small E, Marrington R, Rodger A, Scott DJ, Sloan K, Roper D, Dafforn TR, Addinall SG
FtsZ polymer-bundling by the Escherichia coli ZapA orthologue, YgfE, involves a conformational change in bound GTP.
J Mol Biol. 2007 May 25;369(1):210-21. Epub 2007 Mar 19.
Snijder HJ, Ubarretxena-Belandia I, Blaauw M, Kalk KH, Verheij HM, Egmond MR, Dekker N, Dijkstra BW
Structural evidence for dimerization-regulated activation of an integral membrane phospholipase.
Nature. 1999 Oct 14;401(6754):717-21
Spelbrink RE, Kolkman A, Slijper M, Killian JA, de Kruijff B.
Detection and identification of stable oligomeric protein complexes in Escherichi coli inner membranes: a proteomics approach.
J Biol Chem. 2005
Sperandeo P, Cescutti R, Villa R, Di Benedetto C, Candia D, Deho G, Polissi A
Characterization of lptA and lptB, two essential genes implicated in lipopolysaccharide transport to the outer membrane of Escherichia coli.
J Bacteriol. 2007 Jan;189(1):244-53. Epub 2006 Oct 20.
Spratt BG
Distinct penicillin binding proteins involved in the division, elongation, and shape of Escherichia coli K12.
Proc Natl Acad Sci U S A. 1975 Aug;72(8):2999-3003.
 
Stead C, Tran A, Ferguson D Jr, McGrath S, Cotter R, Trent S
A novel 3-deoxy-D-manno-octulosonic acid (Kdo) hydrolase that removes the outer Kdo sugar of Helicobacter pylori lipopolysaccharide.
J Bacteriol. 2005 May;187(10):3374-83
Stenberg F, Chovanec P, Maslen SL, Robinson CV, Ilag LL, von Heijne G, Daley DO
Protein complexes of the Escherichia coli cell envelope.
J Biol Chem. 2005 Oct 14;280(41):34409-19. Epub 2005 Aug 3.
Stout V, Gottesman S
RcsB and RcsC: a two-component regulator of capsule synthesis in Escherichia coli.
J Bacteriol. 1990 Feb;172(2):659-69.
Strozen TG, Stanley H, Gu Y, Boyd J, Bagdasarian M, Sandkvist M, Howard SP
Involvement of the GspAB complex in assembly of the type II secretion system secretin of Aeromonas and Vibrio species.
J Bacteriol. 2011 May;193(9):2322-31. doi: 10.1128/JB.01413-10. Epub 2011 Mar 4.
Stymest KH, Klappa P
The periplasmic peptidyl prolyl cis-trans isomerases PpiD and SurA have partially overlapping substrate specificities.
FEBS J. 2008 Jul;275(13):3470-9. doi: 10.1111/j.1742-4658.2008.06493.x. Epub 2008 May 22.
Su CC, Yang F, Long F, Reyon D, Routh MD, Kuo DW, Mokhtari AK, Van Ornam JD, Rabe KL, Hoy JA, Lee YJ, Rajashankar KR, Yu EW
Crystal structure of the membrane fusion protein CusB from Escherichia coli.
J Mol Biol. 2009 Oct 23;393(2):342-55. doi: 10.1016/j.jmb.2009.08.029
Sung MT, Lai YT, Huang CY, Chou LY, Shih HW, Cheng WC, Wong CH, Ma C
Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli.
Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8824-9. doi: 10.1073/pnas.0904030106. Epub 2009 May 19.
Surin BP, Rosenberg H, Cox GB
Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships.
J Bacteriol. 1985 Jan;161(1):189-98.
Taghbalout A, Rothfield L
RNaseE and the other constituents of the RNA degradosome are components of the bacterial cytoskeleton.
Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1667-72. Epub 2007 Jan 22.
Tajima Y
[Present status of experimental animals in Japan (author's transl)].
Jikken Dobutsu. 1975 Apr;24(2):67-77.
Tanaka Y, Itoh F, Kimata K, Aiba H
Membrane localization itself but not binding to IICB is directly responsible for the inactivation of the global repressor Mlc in Escherichia coli.
Mol Microbiol. 2004 Aug;53(3):941-51.
Tao K
Subcellular localization and in vivo oxidation-reduction kinetics of thiol peroxidase in Escherichia coli.
FEMS Microbiol Lett. 2008 Dec;289(1):41-5. doi: 10.1111/j.1574-6968.2008.01372.x.
te Riele HP, Venema G
Heterospecific transformation in Bacillus subtilis: protein composition of a membrane-DNA complex containing unstable heterologous donor-recipient complex.
Mol Gen Genet. 1984;197(3):478-85.
Thein M, Sauer G, Paramasivam N, Grin I, Linke D.
Efficient subfractionation of gram-negative bacteria for proteomics studies.
J Proteome Res. 2010
Tokuda H, Matsuyama S
Sorting of lipoproteins to the outer membrane in E. coli.
Biochim Biophys Acta. 2004 Jul 23;1693(1):5-13.
Trchounian K, Poladyan A, Vassilian A, Trchounian A
Multiple and reversible hydrogenases for hydrogen production by Escherichia coli: dependence on fermentation substrate, pH and the F(0)F(1)-ATPase.
Crit Rev Biochem Mol Biol. 2012 May-Jun;47(3):236-49. doi: 10.3109/10409238.2012.655375. Epub 2012 Feb 7.
Tullman-Ercek D, DeLisa MP, Kawarasaki Y, Iranpour P, Ribnicky B, Palmer T, Georgiou G
Export pathway selectivity of Escherichia coli twin arginine translocation signal peptides.
J Biol Chem. 2007 Mar 16;282(11):8309-16. Epub 2007 Jan 11.
Turner S, Reid E, Smith H, Cole J
A novel cytochrome c peroxidase from Neisseria gonorrhoeae: a lipoprotein from a Gram-negative bacterium.
Biochem J. 2003 Aug 1;373(Pt 3):865-73.
Typas A, Banzhaf M, van den Berg van Saparoea B, Verheul J, Biboy J, Nichols RJ, Zietek M, Beilharz K, Kannenberg K, von Rechenberg M, Breukink E, den Blaauwen T, Gross CA, Vollmer W
Regulation of peptidoglycan synthesis by outer-membrane proteins.
Cell. 2010 Dec 23;143(7):1097-109. doi: 10.1016/j.cell.2010.11.038.
Uehara T, Park JT
Identification of MpaA, an amidase in Escherichia coli that hydrolyzes the gamma-D-glutamyl-meso-diaminopimelate bond in murein peptides.
J Bacteriol. 2003 Jan;185(2):679-82.
Ulbrandt ND, Newitt JA, Bernstein HD
The E. coli signal recognition particle is required for the insertion of a subset of inner membrane proteins.
Cell. 1997 Jan 24;88(2):187-96
Urbanus ML, Fröderberg L, Drew D, Björk P, de Gier JW, Brunner J, Oudega B, Luirink J
Targeting, insertion, and localization of Escherichia coli YidC.
J Biol Chem. 2002 Apr 12;277(15):12718-23
van den Berg B, Black PN, Clemons WM Jr, Rapoport TA
Crystal structure of the long-chain fatty acid transporter FadL.
Science. 2004 Jun 4;304(5676):1506-9
van den Ent F, Johnson CM, Persons L, de Boer P, Lowe J
Bacterial actin MreB assembles in complex with cell shape protein RodZ.
EMBO J. 2010 Mar 17;29(6):1081-90. doi: 10.1038/emboj.2010.9. Epub 2010 Feb 18.
van der Rest ME, Frank C, Molenaar D
Functions of the membrane-associated and cytoplasmic malate dehydrogenases in the citric acid cycle of Escherichia coli.
J Bacteriol. 2000 Dec;182(24):6892-9.
Vandeputte-Rutten L, Kramer RA, Kroon J, Dekker N, Egmond MR, Gros P
Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site.
EMBO J. 2001 Sep 17;20(18):5033-9
VanSlyke JK, Franke CA, Hruby DE
Proteolytic maturation of vaccinia virus core proteins: identification of a conserved motif at the N termini of the 4b and 25K virion proteins.
J Gen Virol. 1991 Feb;72 ( Pt 2):411-6.
Vertommen D, Ruiz N, Leverrier P, Silhavy TJ, Collet JF
Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics.
Proteomics. 2009 May;9(9):2432-43. doi: 10.1002/pmic.200800794.
 
Vertommen D, Ruiz N, Leverrier P, Silhavy TJ, Collet JF
Characterization of the role of the Escherichia coli periplasmic chaperone SurA using differential proteomics.
Proteomics. 2009 May;9(9):2432-43. doi: 10.1002/pmic.200800794.
Vijayan S, Mallick S, Dutta M, Narayani M, Ghosh AS
PBP deletion mutants of Escherichia coli exhibit irregular distribution of MreB at the deformed zones.
Curr Microbiol. 2014 Feb;68(2):174-9. doi: 10.1007/s00284-013-0453-z
Villa E, Balaeff A, Schulten K
Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation.
Proc Natl Acad Sci U S A. 2005 May 10;102(19):6783-8. Epub 2005 Apr 29.
Villegas JM, Volentini SI, Rintoul MR, Rapisarda VA
Amphipathic C-terminal region of Escherichia coli NADH dehydrogenase-2 mediates membrane localization.
Arch Biochem Biophys. 2011 Jan 15;505(2):155-9. doi: 10.1016/j.abb.2010.10.001. Epub 2010 Oct 8.
Vinson HM, Gautam A, Olet S, Gibbs PS, Barigye R
Molecular analysis of porin gene transcription in heterogenotypic multidrug-resistant Escherichia coli isolates from scouring calves.
J Antimicrob Chemother. 2010 Sep;65(9):1926-35. doi: 10.1093/jac/dkq246
Vogt J, Schulz GE
The structure of the outer membrane protein OmpX from Escherichia coli reveals possible mechanisms of virulence.
Structure. 1999 Oct 15;7(10):1301-9
Vollmer W, von Rechenberg M, Holtje JV
Demonstration of molecular interactions between the murein polymerase PBP1B, the lytic transglycosylase MltA, and the scaffolding protein MipA of Escherichia coli.
J Biol Chem. 1999 Mar 5;274(10):6726-34.
Volpon L, Young CR, Matte A, Gehring K
NMR structure of the enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system and its interaction with GatA.
Protein Sci. 2006 Oct;15(10):2435-41. Epub 2006 Sep 8.
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