STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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First Author
Publication Title
Pubmed ID
Referring Protein(s)
Wadler CS, Vanderpool CK
A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide.
Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20454-9
Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW
Consequences of membrane protein overexpression in Escherichia coli.
Mol Cell Proteomics. 2007 Sep;6(9):1527-50. Epub 2007 Apr 19.
Wai SN, Lindmark B, Soderblom T, Takade A, Westermark M, Oscarsson J, Jass J, Richter-Dahlfors A, Mizunoe Y, Uhlin BE
Vesicle-mediated export and assembly of pore-forming oligomers of the enterobacterial ClyA cytotoxin.
Cell. 2003 Oct 3;115(1):25-35.
Waksman G, Hultgren SJ
Structural biology of the chaperone-usher pathway of pilus biogenesis.
Nat Rev Microbiol. 2009 Nov;7(11):765-74. doi: 10.1038/nrmicro2220. Epub 2009 Oct 12.
Walz AC, Demel RA, de Kruijff B, Mutzel R
Aerobic sn-glycerol-3-phosphate dehydrogenase from Escherichia coli binds to the cytoplasmic membrane through an amphipathic alpha-helix.
Biochem J. 2002 Jul 15;365(Pt 2):471-9.
Wang G, Keifer PA, Peterkofsky A
Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles.
Protein Sci. 2003 May;12(5):1087-96.
Wang Y, Stieglitz KA, Bubunenko M, Court DL, Stec B, Roberts MF
The structure of the R184A mutant of the inositol monophosphatase encoded by suhB and implications for its functional interactions in Escherichia coli.
J Biol Chem. 2007 Sep 14;282(37):26989-96. Epub 2007 Jul 25.
Wang Y, Zhang Y, Ha Y
Crystal structure of a rhomboid family intramembrane protease.
Nature. 2006 Nov 9;444(7116):179-80
Ward JB, Glaser L
Turnover of UDP-sugars in E.
Arch Biochem Biophys. 1969 Nov;134(2):612-22.
Warner JR
YbeY: the jealous tailor.
Mol Cell. 2013 Feb 7;49(3):422-3. doi: 10.1016/j.molcel.2013.01.021.
Wasinger VC, Humphery-Smith I
Small genes/gene-products in Escherichia coli K-12.
FEMS Microbiol Lett. 1998 Dec 15;169(2):375-82.
Waters LS, Sandoval M, Storz G
The Escherichia coli MntR miniregulon includes genes encoding a small protein and an efflux pump required for manganese homeostasis.
J Bacteriol. 2011 Nov;193(21):5887-97. doi: 10.1128/JB.05872-11
Watt RM, Wang J, Leong M, Kung HF, Cheah KS, Liu D, Danchin A, Huang JD
Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes.
Nucleic Acids Res. 2007;35(6):e37. Epub 2007 Jan 31.
Wehland M, Bernhard F
The RcsAB box. Characterization of a new operator essential for the regulation of exopolysaccharide biosynthesis in enteric bacteria.
J Biol Chem. 2000 Mar 10;275(10):7013-20.
Weiche B, Burk J, Angelini S, Schiltz E, Thumfart JO, Koch HG
A cleavable N-terminal membrane anchor is involved in membrane binding of the Escherichia coli SRP receptor.
J Mol Biol. 2008 Mar 28;377(3):761-73. doi: 10.1016/j.jmb.2008.01.040. Epub 2008 Jan 26.
Weiner JH, Li L
Proteome of the Escherichia coli envelope and technological challenges in membrane proteome analysis.
Biochim Biophys Acta. 2008 Sep;1778(9):1698-713. Epub 2007 Aug 11.
Welz D, Braun V
Ferric citrate transport of Escherichia coli: functional regions of the FecR transmembrane regulatory protein.
J Bacteriol. 1998 May;180(9):2387-94.
Williams KB, Yahashiri A, Arends SJ, Popham DL, Fowler CA, Weiss DS
Nuclear magnetic resonance solution structure of the peptidoglycan-binding SPOR domain from Escherichia coli DamX: insights into septal localization.
Biochemistry. 2013 Jan 29;52(4):627-39. doi: 10.1021/bi301609e
Wu J, Woodard RW
Escherichia coli YrbI is 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase.
J Biol Chem. 2003 May 16;278(20):18117-23. Epub 2003 Mar 14.
Wu T, Malinverni J, Ruiz N, Kim S, Silhavy TJ, Kahne D
Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli.
Cell. 2005 Apr 22;121(2):235-45.
Wu Z, Walsh CT
Phosphinate analogs of D-, D-dipeptides: slow-binding inhibition and proteolysis protection of VanX, a D-, D-dipeptidase required for vancomycin resistance in Enterococcus faecium.
Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11603-7
Xie K, Kiefer D, Nagler G, Dalbey RE, Kuhn A
Different regions of the nonconserved large periplasmic domain of Escherichia coli YidC are involved in the SecF interaction and membrane insertase activity.
Biochemistry. 2006 Nov 7;45(44):13401-8
Xu C, Lin X, Ren H, Zhang Y, Wang S, Peng X
Analysis of outer membrane proteome of Escherichia coli related to resistance to ampicillin and tetracycline.
Proteomics. 2006 Jan;6(2):462-73.
Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W, Cho HS, Chang I, Lee K, Ha NC
Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC.
J Biol Chem. 2011 Apr 15;286(15):13541-9. doi: 10.1074/jbc.M110.202598. Epub 2011 Feb 16.
Yamada M, Feucht BU, Saier MH Jr
Regulation of gluconeogenesis by the glucitol enzyme III of the phosphotransferase system in Escherichia coli.
J Bacteriol. 1987 Dec;169(12):5416-22.
Yamada M, Makino K, Shinagawa H, Nakata A
Regulation of the phosphate regulon of Escherichia coli: properties of phoR deletion mutants and subcellular localization of PhoR protein.
Mol Gen Genet. 1990 Feb;220(3):366-72.
Yamagata A, Tainer JA
Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
EMBO J. 2007 Feb 7;26(3):878-90. Epub 2007 Jan 25.
Yamamoto K, Hirao K, Oshima T, Aiba H, Utsumi R, Ishihama A
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli.
J Biol Chem. 2005 Jan 14;280(2):1448-56. Epub 2004 Nov 2.
Yanez ME, Korotkov KV, Abendroth J, Hol WG
Structure of the minor pseudopilin EpsH from the Type 2 secretion system of Vibrio cholerae.
J Mol Biol. 2008 Mar 14;377(1):91-103. doi: 10.1016/j.jmb.2007.08.041. Epub 2007 Aug 23.
Yankovskaya V, Horsefield R, Törnroth S, Luna-Chavez C, Miyoshi H, Léger C, Byrne B, Cecchini G, Iwata S
Architecture of succinate dehydrogenase and reactive oxygen species generation.
Science. 2003 Jan 31;299(5607):700-4
Yeats C, Bateman A
The BON domain: a putative membrane-binding domain.
Trends Biochem Sci. 2003 Jul;28(7):352-5.
Yim L, Moukadiri I, Bjork GR, Armengod ME
Further insights into the tRNA modification process controlled by proteins MnmE and GidA of Escherichia coli.
Nucleic Acids Res. 2006;34(20):5892-905. Epub 2006 Oct 24.
Yin Y, He X, Szewczyk P, Nguyen T, Chang G
Structure of the multidrug transporter EmrD from Escherichia coli.
Science. 2006 May 5;312(5774):741-4
Yoshida H, Maki Y, Furuike S, Sakai A, Ueta M, Wada A
YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli.
J Bacteriol. 2012 Aug;194(16):4178-83. doi: 10.1128/JB.00396-12. Epub 2012 Jun 1.
Yoshida K, Rutishauser U, Crandall JE, Schwarting GA
Polysialic acid facilitates migration of luteinizing hormone-releasing hormone neurons on vomeronasal axons.
J Neurosci. 1999 Jan 15;19(2):794-801
Young K, Silver LL, Bramhill D, Cameron P, Eveland SS, Raetz CR, Hyland SA, Anderson MS
The envA permeability/cell division gene of Escherichia coli encodes the second enzyme of lipid A biosynthesis. UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase.
J Biol Chem. 1995 Dec 22;270(51):30384-91.
Yu R, Koran A
Dimensional stability of elastomers for maxillofacial applications.
J Dent Res. 1979 Sep;58(9):1908-9.
Yum S, Xu Y, Piao S, Sim SH, Kim HM, Jo WS, Kim KJ, Kweon HS, Jeong MH, Jeon H, Lee K, Ha NC
Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump.
J Mol Biol. 2009 Apr 17;387(5):1286-97. doi: 10.1016/j.jmb.2009.02.048. Epub 2009 Feb 28.
Zhang J, Xing X, Herr AB, Bell CE
Crystal structure of E. coli RecE protein reveals a toroidal tetramer for processing double-stranded DNA breaks.
Structure. 2009 May 13;17(5):690-702. doi: 10.1016/j.str.2009.03.008.
Zhang Z, Aboulwafa M, Smith MH, Saier MH Jr
The ascorbate transporter of Escherichia coli.
J Bacteriol. 2003 Apr;185(7):2243-50.
Zhao CR, de Boer PA, Rothfield LI
Proper placement of the Escherichia coli division site requires two functions that are associated with different domains of the MinE protein.
Proc Natl Acad Sci U S A. 1995 May 9;92(10):4313-7.
Zogaj X, Nimtz M, Rohde M, Bokranz W, Romling U
The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix.
Mol Microbiol. 2001 Mar;39(6):1452-63.
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