STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

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First Author
Publication Title
Pubmed ID
Referring Protein(s)
Braun V, Mahren S, Sauter A
Gene regulation by transmembrane signaling.
Biometals. 2006 Apr;19(2):103-13.
Brombacher E, Baratto A, Dorel C, Landini P
Gene expression regulation by the Curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion.
J Bacteriol. 2006 Mar;188(6):2027-37.
Brozek KA, Hosaka K, Robertson AD, Raetz CR
Biosynthesis of lipopolysaccharide in Escherichia coli. Cytoplasmic enzymes that attach 3-deoxy-D-manno-octulosonic acid to lipid A.
J Biol Chem. 1989 Apr 25;264(12):6956-66
Buchanan SK, Smith BS, Venkatramani L, Xia D, Esser L, Palnitkar M, Chakraborty R, van der Helm D, Deisenhofer J
Crystal structure of the outer membrane active transporter FepA from Escherichia coli.
Nat Struct Biol. 1999 Jan;6(1):56-63
Buddelmeijer N, Aarsman ME, Kolk AH, Vicente M, Nanninga N
Localization of cell division protein FtsQ by immunofluorescence microscopy in dividing and nondividing cells of Escherichia coli.
J Bacteriol. 1998 Dec;180(23):6107-16.
Cabedo H, Macian F, Villarroya M, Escudero JC, Martinez-Vicente M, Knecht E, Armengod ME
The Escherichia coli trmE (mnmE) gene, involved in tRNA modification, codes for an evolutionarily conserved GTPase with unusual biochemical properties.
EMBO J. 1999 Dec 15;18(24):7063-76.
Campos M, Nilges M, Cisneros DA, Francetic O
Detailed structural and assembly model of the type II secretion pilus from sparse data.
Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):13081-6. doi:10.1073/pnas.1001703107. Epub 2010 Jul 2.
Cao Z, Song P, Xu Q, Su R, Zhu G
Overexpression and biochemical characterization of soluble pyridine nucleotide transhydrogenase from Escherichia coli.
FEMS Microbiol Lett. 2011 Jul;320(1):9-14. doi: 10.1111/j.1574-6968.2011.02287.x. Epub 2011 May 6.
Carabetta VJ, Mohanty BK, Kushner SR, Silhavy TJ
The response regulator SprE (RssB) modulates polyadenylation and mRNA stability in Escherichia coli.
J Bacteriol. 2009 Nov;191(22):6812-21. doi: 10.1128/JB.00870-09. Epub 2009 Sep18.
Castanie-Cornet MP, Treffandier H, Francez-Charlot A, Gutierrez C, Cam K
The glutamate-dependent acid resistance system in Escherichia coli: essential and dual role of the His-Asp phosphorelay RcsCDB/AF.
Microbiology. 2007 Jan;153(Pt 1):238-46.
Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T
A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.
PLoS One. 2012;7(8):e43245. doi: 10.1371/journal.pone.0043245
Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T
A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.
PLoS One. 2012;7(8):e43245. doi: 10.1371/journal.pone.0043245
Celis RT
Mutant of Escherichia coli K-12 with defective phosphorylation of two periplasmic transport proteins.
J Biol Chem. 1990 Jan 25;265(3):1787-93.
Chen JC, Beckwith J
FtsQ, FtsL and FtsI require FtsK, but not FtsN, for co-localization with FtsZ during Escherichia coli cell division.
Mol Microbiol. 2001 Oct;42(2):395-413.
Chimento DP, Mohanty AK, Kadner RJ, Wiener MC
Substrate-induced transmembrane signaling in the cobalamin transporter BtuB.
Nat Struct Biol. 2003 May;10(5):394-401
Choi JH, Lee SY
Secretory and extracellular production of recombinant proteins using Escherichia coli.
Appl Microbiol Biotechnol. 2004 Jun;64(5):625-35. Epub 2004 Feb 14.
Chou TF, Bieganowski P, Shilinski K, Cheng J, Brenner C, Wagner CR
31P NMR and genetic analysis establish hinT as the only Escherchia coli purine nucleoside phosphoramidase and as essential for growth under high salt conditions.
J Biol Chem. 2005 Apr 15;280(15):15356-61. Epub 2005 Feb 9.
Cipolla L, Polissi A, Airoldi C, Galliani P, Sperandeo P, Nicotra F
The Kdo biosynthetic pathway toward OM biogenesis as target in antibacterial drug design and development.
Curr Drug Discov Technol. 2009 Mar;6(1):19-33.
Cisneros DA, Pehau-Arnaudet G, Francetic O
Heterologous assembly of type IV pili by a type II secretion system reveals the role of minor pilins in assembly initiation.
Mol Microbiol. 2012 Nov;86(4):805-18. doi: 10.1111/mmi.12033. Epub 2012 Sep 25.
Coles M, Djuranovic S, Soding J, Frickey T, Koretke K, Truffault V, Martin J, Lupas AN
AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.
Structure. 2005 Jun;13(6):919-28.
Coutts G, Thomas G, Blakey D, Merrick M
Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.
EMBO J. 2002 Feb 15;21(4):536-45.
Cowan SW, Schirmer T, Rummel G, Steiert M, Ghosh R, Pauptit RA, Jansonius JN, Rosenbusch JP
Crystal structures explain functional properties of two E. coli porins.
Nature. 1992 Aug 27;358(6389):727-33
Cowles CE, Li Y, Semmelhack MF, Cristea IM, Silhavy TJ
The free and bound forms of Lpp occupy distinct subcellular locations in Escherichia coli.
Mol Microbiol. 2011 Mar;79(5):1168-81. doi: 10.1111/j.1365-2958.2011.07539.x
Cozzarelli NR, Koch JP, Hayashi S, Lin EC
Growth stasis by accumulated L-alpha-glycerophosphate in Escherichia coli.
J Bacteriol. 1965 Nov;90(5):1325-9.
Crane FL
Discovery of ubiquinone (coenzyme Q) and an overview of function.
Mitochondrion. 2007 Jun;7 Suppl:S2-7
Dalal K, Nguyen N, Alami M, Tan J, Moraes TF, Lee WC, Maurus R, Sligar SS, Brayer GD, Duong F
Structure, binding, and activity of Syd, a SecY-interacting protein.
J Biol Chem. 2009 Mar 20;284(12):7897-902. doi: 10.1074/jbc.M808305200. Epub 2009 Jan 12.
Dasgupta T, Lam JS
Identification of rfbA, involved in B-band lipopolysaccharide biosynthesis in Pseudomonas aeruginosa serotype O5.
Infect Immun. 1995 May;63(5):1674-80
de Boer PA, Crossley RE, Hand AR, Rothfield LI
The MinD protein is a membrane ATPase required for the correct placement of the Escherichia coli division site.
EMBO J. 1991 Dec;10(13):4371-80.
de Boer PA, Crossley RE, Rothfield LI
A division inhibitor and a topological specificity factor coded for by the minicell locus determine proper placement of the division septum in E. coli.
Cell. 1989 Feb 24;56(4):641-9.
De Las Penas A, Connolly L, Gross CA
The sigmaE-mediated response to extracytoplasmic stress in Escherichia coli is transduced by RseA and RseB, two negative regulators of sigmaE.
Mol Microbiol. 1997 Apr;24(2):373-85.
de Leeuw E, Graham B, Phillips GJ, ten Hagen-Jongman CM, Oudega B, Luirink J
Molecular characterization of Escherichia coli FtsE and FtsX.
Mol Microbiol. 1999 Feb;31(3):983-93.
De Leeuw E, Porcelli I, Sargent F, Palmer T, Berks BC
Membrane interactions and self-association of the TatA and TatB components of the twin-arginine translocation pathway.
FEBS Lett. 2001 Oct 5;506(2):143-8.
Defeu Soufo HJ, Reimold C, Linne U, Knust T, Gescher J, Graumann PL
Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein.
Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):3163-8. doi: 10.1073/pnas.0911979107. Epub 2010 Jan 28.
Deng M, Misra R
Examination of AsmA and its effect on the assembly of Escherichia coli outer membrane proteins.
Mol Microbiol. 1996 Aug;21(3):605-12.
Denoncin K, Vertommen D, Paek E, Collet JF
The protein-disulfide isomerase DsbC cooperates with SurA and DsbA in the assembly of the essential beta-barrel protein LptD.
J Biol Chem. 2010 Sep 17;285(38):29425-33. doi: 10.1074/jbc.M110.119321. Epub 2010 Jul 7.
Dhamdhere G, Zgurskaya HI
Metabolic shutdown in Escherichia coli cells lacking the outer membrane channel TolC.
Mol Microbiol. 2010 Aug;77(3):743-54. doi: 10.1111/j.1365-2958.2010.07245.x. Epub 2010 Jun 1.
Diestra E, Cayrol B, Arluison V, Risco C
Cellular electron microscopy imaging reveals the localization of the Hfq protein close to the bacterial membrane.
PLoS One. 2009 Dec 14;4(12):e8301. doi: 10.1371/journal.pone.0008301.
Dong C, Beis K, Nesper J, Brunkan-Lamontagne AL, Clarke BR, Whitfield C, Naismith JH
Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein.
Nature. 2006 Nov 9;444(7116):226-9
Dong J, Iuchi S, Kwan HS, Lu Z, Lin EC
The deduced amino-acid sequence of the cloned cpxR gene suggests the protein is the cognate regulator for the membrane sensor, CpxA, in a two-component signal transduction system of Escherichia coli.
Gene. 1993 Dec 22;136(1-2):227-30.
Drummelsmith J, Whitfield C
Translocation of group 1 capsular polysaccharide to the surface of Escherichia coli requires a multimeric complex in the outer membrane.
EMBO J. 2000 Jan 4;19(1):57-66
Durand-Heredia JM, Yu HH, De Carlo S, Lesser CF, Janakiraman A
Identification and characterization of ZapC, a stabilizer of the FtsZ ring in Escherichia coli.
J Bacteriol. 2011 Mar;193(6):1405-13. doi: 10.1128/JB.01258-10
Dutta D, Bandyopadhyay K, Datta AB, Sardesai AA, Parrack P
Properties of HflX, an enigmatic protein from Escherichia coli.
J Bacteriol. 2009 Apr;191(7):2307-14. doi: 10.1128/JB.01353-08. Epub 2009 Jan 30.
Dutzler R, Campbell EB, Cadene M, Chait BT, MacKinnon R
X-ray structure of a ClC chloride channel at 3.0 A reveals the molecular basis of anion selectivity.
Nature. 2002 Jan 17;415(6869):287-94
Dym O, Pratt EA, Ho C, Eisenberg D
The crystal structure of D-lactate dehydrogenase, a peripheral membrane respiratory enzyme.
Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9413-8.
Edgren T, Nordlund S
The fixABCX genes in Rhodospirillum rubrum encode a putative membrane complex participating in electron transfer to nitrogenase.
J Bacteriol. 2004 Apr;186(7):2052-60.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA
The fix Escherichia coli region contains four genes related to carnitine metabolism.
J Basic Microbiol. 1995;35(4):217-27.
el Yaagoubi A, Kohiyama M, Richarme G
Localization of DnaK (chaperone 70) from Escherichia coli in an osmotic-shock-sensitive compartment of the cytoplasm.
J Bacteriol. 1994 Nov;176(22):7074-8.
Engels S, Ludwig C, Schweitzer JE, Mack C, Bott M, Schaffer S
The transcriptional activator ClgR controls transcription of genes involved in proteolysis and DNA repair in Corynebacterium glutamicum.
Mol Microbiol. 2005 Jul;57(2):576-91.
Engl C, Jovanovic G, Lloyd LJ, Murray H, Spitaler M, Ying L, Errington J, Buck M
In vivo localizations of membrane stress controllers PspA and PspG in Escherichia coli.
Mol Microbiol. 2009 Aug;73(3):382-96. doi: 10.1111/j.1365-958.2009.06776.x. Epub 2009 Jun 22.
Erbel PJ, Barr K, Gao N, Gerwig GJ, Rick PD, Gardner KH
Identification and biosynthesis of cyclic enterobacterial common antigen in Escherichia coli.
J Bacteriol. 2003 Mar;185(6):1995-2004.
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