STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
PPK_ECOLI
P0A7B1
ppk
b2501 JW2486
Polyphosphate kinase (EC 2.7.4.1) (ATP-polyphosphate phosphotransferase) (Polyphosphoric acid kinase)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cell inner membrane | Peripheral membrane protein
Cytoplasmic
 
 
 
 
 
yes
yes
NADK_ECOLI
P0A7B3
ppnK
b2615 JW2596
Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) (EC 2.7.1.23)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
PURA_ECOLI
P0A7D4
purA
b4177 JW4135
Adenylosuccinate synthetase (AMPSase) (AdSS) (EC 6.3.4.4) (IMP--aspartate ligase)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
PUR7_ECOLI
P0A7D7
purC
b2476 JW2461
Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) (SAICAR synthetase)
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
 
Cytoplasmic
 
 
 
 
 
yes
yes
PYRD_ECOLI
P0A7E1
pyrD
b0945 JW0928
Dihydroorotate dehydrogenase (EC 1.3.5.2) (DHOdehase) (DHOD) (DHODase) (Dihydroorotate oxidase)
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
Cell membrane | Peripheral membrane protein
Cytoplasmic
 
 
 
 
 
yes
yes
PYRG_ECOLI
P0A7E5
pyrG
b2780 JW2751
CTP synthase (EC 6.3.4.2) (CTP synthetase) (UTP--ammonia ligase)
Peripheral inner membrane protein facing the cytoplasm
F1
IM (predicted)
 
Cytoplasmic
 
TF
 
 
 
yes
yes
PYRH_ECOLI
P0A7E9
pyrH
b0171 JW0166
Uridylate kinase (UK) (EC 2.7.4.22) (Uridine monophosphate kinase) (UMP kinase) (UMPK)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RBFA_ECOLI
P0A7G2
rbfA
b3167 JW3136
Ribosome-binding factor A (Protein P15B)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RECA_ECOLI
P0A7G6
recA
b2699 JW2669
Protein recA (Recombinase A)
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
TF
 
 
 
no
yes
RECF_ECOLI
P0A7H0
recF
b3700 JW3677
DNA replication and repair protein recF
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RIBB_ECOLI
P0A7J0
ribB
b3041 JW3009
3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cell membrane | Peripheral membrane protein
Cytoplasmic
 
 
 
 
 
yes
yes
RIMM_ECOLI
P0A7X6
rimM
b2608 JW5413
Ribosome maturation factor rimM (21K)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RNC_ECOLI
P0A7Y0
rnc
b2567 JW2551
Ribonuclease 3 (EC 3.1.26.3) (Ribonuclease III) (RNase III)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
RPOA_ECOLI
P0A7Z4
rpoA
b3295 JW3257
DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha) (EC 2.7.7.6) (RNA polymerase subunit alpha) (Transcriptase subunit alpha)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RPOZ_ECOLI
P0A800
rpoZ
b3649 JW3624
DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (EC 2.7.7.6) (RNA polymerase omega subunit) (Transcriptase subunit omega)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RRF_ECOLI
P0A805
frr
b0172 JW0167
Ribosome-recycling factor (RRF) (Ribosome-releasing factor)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
METK_ECOLI
P0A817
metK
b2942 JW2909
S-adenosylmethionine synthase (AdoMet synthase) (EC 2.5.1.6) (MAT) (Methionine adenosyltransferase)
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
GLYA_ECOLI
P0A825
glyA
b2551 JW2535
Serine hydroxymethyltransferase (SHMT) (Serine methylase) (EC 2.1.2.1)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
SUCC_ECOLI
P0A836
sucC
b0728 JW0717
Succinyl-CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
TIG_ECOLI
P0A850
tig
b0436 JW0426
Trigger factor (TF)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
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