STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
TPIS_ECOLI
P0A858
tpiA
b3919 JW3890
Triosephosphate isomerase (TIM) (EC 5.3.1.1) (Triose-phosphate isomerase)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
TPX_ECOLI
P0A862
tpx
b1324 JW1317
Thiol peroxidase (EC 1.11.1.-) (Scavengase P20)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Periplasm
Periplasmic (Experimental)
 
 
 
 
 
yes
yes
TALB_ECOLI
P0A870
talB
b0008 JW0007
Transaldolase B (EC 2.2.1.2)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
YHBJ_ECOLI
P0A894
yhbJ
b3205 JW3172
UPF0042 nucleotide-binding protein yhbJ
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RIMP_ECOLI
P0A8A8
rimP
b3170 JW5533
Ribosome maturation factor rimP
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
YIHI_ECOLI
P0A8H6
yihI
b3866 JW3837
UPF0241 protein yihI
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RHLB_ECOLI
P0A8J8
rhlB
b3780 JW3753
ATP-dependent RNA helicase rhlB (EC 3.6.4.13)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
PSD_ECOLI
P0A8K1
psd
b4160 JW4121
Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65) [Cleaved into: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain]
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
Cell membrane | Peripheral membrane protein
Cytoplasmic (Experimental)
 
 
 
 
 
no
yes
SYS_ECOLI
P0A8L1
serS
b0893 JW0876
Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Seryl-tRNA(Ser/Sec) synthetase)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
SYN_ECOLI
P0A8M0
asnS
b0930 JW0913
Asparaginyl-tRNA synthetase (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
SYT_ECOLI
P0A8M3
thrS
b1719 JW1709
Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
FETP_ECOLI
P0A8P3
yggX
b2962 JW2929
Probable Fe(2+)-trafficking protein
Peripheral inner membrane protein facing the cytoplasm
F1
Soluble IM Fraction
 
Cytoplasmic
 
 
 
 
 
no
yes
RRAA_ECOLI
P0A8R0
rraA
b3929 JW3900
Regulator of ribonuclease activity A
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
RPOC_ECOLI
P0A8T7
rpoC
b3988 JW3951
DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta')
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
SYDP_ECOLI
P0A8U0
syd
b2793 JW2764
Protein syd
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cell inner membrane | Peripheral membrane protein | Cytoplasmic side
Cytoplasmic
 
 
 
 
 
yes
yes
RPOB_ECOLI
P0A8V2
rpoB
b3987 JW3950
DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
YJGA_ECOLI
P0A8X0
yjgA
b4234 JW4193
UPF0307 protein yjgA (x96 protein)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
YBGC_ECOLI
P0A8Z3
ybgC
b0736 JW0726
Acyl-CoA thioester hydrolase YbgC (Acyl-CoA thioesterase) (EC 3.1.2.-)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cell inner membrane | Peripheral membrane protein | Cytoplasmic side
Cytoplasmic
 
 
 
 
 
yes
yes
RIMJ_ECOLI
P0A948
rimJ
b1066 JW1053
Ribosomal-protein-alanine acetyltransferase (EC 2.3.1.128) (Acetylating enzyme for N-terminal of ribosomal protein S5)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
FABB_ECOLI
P0A953
fabB
b2323 JW2320
3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase I) (Beta-ketoacyl-ACP synthase I) (KAS I)
Peripheral inner membrane protein facing the cytoplasm
F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
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