STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RPOD_ECOLI
P00579
rpoD
b3067 JW3039
RNA polymerase sigma factor rpoD (Sigma-70)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
SYA_ECOLI
P00957
alaS
b2697 JW2667
Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
no
yes
DNAA_ECOLI
P03004
dnaA
b3702 JW3679
Chromosomal replication initiator protein dnaA
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
MALT_ECOLI
P06993
malT
b3418 JW3381
HTH-type transcriptional regulator MalT
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
PUTA_ECOLI
P09546
putA
b1014 JW0999
Bifunctional protein putA [Includes: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C dehydrogenase) (EC 1.5.1.12)]
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
Soluble IM Fraction
 
Cytoplasmic
 
 
 
 
 
yes
yes
FIS_ECOLI
P0A6R3
fis
b3261 JW3229
DNA-binding protein fis (Factor-for-inversion stimulation protein) (Hin recombinational enhancer-binding protein)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
IHFA_ECOLI
P0A6X7
ihfA
b1712 JW1702
Integration host factor subunit alpha (IHF-alpha)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
IHFB_ECOLI
P0A6Y1
ihfB
b0912 JW0895
Integration host factor subunit beta (IHF-beta)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
RPPH_ECOLI
P0A776
rppH
b2830 JW2798
RNA pyrophosphohydrolase (EC 3.6.1.-) ((Di)nucleoside polyphosphate hydrolase) (Ap5A pyrophosphatase)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RECF_ECOLI
P0A7H0
recF
b3700 JW3677
DNA replication and repair protein recF
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RNC_ECOLI
P0A7Y0
rnc
b2567 JW2551
Ribonuclease 3 (EC 3.1.26.3) (Ribonuclease III) (RNase III)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
RHLB_ECOLI
P0A8J8
rhlB
b3780 JW3753
ATP-dependent RNA helicase rhlB (EC 3.6.4.13)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RRAA_ECOLI
P0A8R0
rraA
b3929 JW3900
Regulator of ribonuclease activity A
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
CYSB_ECOLI
P0A9F3
cysB
b1275 JW1267
HTH-type transcriptional regulator cysB (Cys regulon transcriptional activator)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
IM (predicted)
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
ARCA_ECOLI
P0A9Q1
arcA
b4401 JW4364
Aerobic respiration control protein ArcA (Dye resistance protein)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
OMPR_ECOLI
P0AA16
ompR
b3405 JW3368
Transcriptional regulatory protein ompR
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
DPS_ECOLI
P0ABT2
dps
b0812 JW0797
DNA protection during starvation protein (EC 1.16.-.-)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
Soluble IM Fraction
Cytoplasm nucleoid
Cytoplasmic (Experimental)
 
 
 
 
 
yes
yes
DNAB_ECOLI
P0ACB0
dnaB
b4052 JW4012
Replicative DNA helicase (EC 3.6.4.12)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
DBHA_ECOLI
P0ACF0
hupA
b4000 JW3964
DNA-binding protein HU-alpha (HU-2) (NS2)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
DBHB_ECOLI
P0ACF4
hupB
b0440 JW0430
DNA-binding protein HU-beta (HU-1) (NS1)
Nucleoid, Peripheral inner membrane protein facing the cytoplasm
N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
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