STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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Peripheral Inner Membrane Proteome of E.coli K-12 (MG1655)

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
RPOD_ECOLI
P00579
rpoD
b3067 JW3039
cytoplasmic nucleoid peripheral IM protein, RNA polymerase sigma factor RpoD
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
DPO1_ECOLI
P00582
polA
b3863 JW3835
cytoplasmic nucleoid peripheral IM protein, DNA polymerase I PolA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
no
yes
SYA_ECOLI
P00957
alaS
b2697 JW2667
cytoplasmic nucleoid peripheral IM protein, Alanine--tRNA ligase AlaS
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
no
yes
DNAA_ECOLI
P03004
dnaA
b3702 JW3679
cytoplasmic nucleoid peripheral IM protein, Chromosomal replication initiator DnaA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
MALT_ECOLI
P06993
malT
b3418 JW3381
cytoplasmic nucleoid peripheral IM protein, HTH-type transcriptional regulator MalT
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
PUTA_ECOLI
P09546
putA
b1014 JW0999
cytoplasmic nucleoid peripheral IM protein, Bifunctional PutA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Soluble IM Fraction
 
Cytoplasmic
 
 
 
 
 
yes
yes
FIS_ECOLI
P0A6R3
fis
b3261 JW3229
cytoplasmic nucleoid peripheral IM protein, DNA-binding Fis
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm; nucleoid
Cytoplasmic
 
 
 
 
 
yes
yes
HFQ_ECOLI
P0A6X3
hfq
b4172 JW4130
cytoplasmic nucleoid peripheral IM protein, RNA-binding Hfq
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
IHFA_ECOLI
P0A6X7
ihfA
b1712 JW1702
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit alpha IhfA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm; nucleoid
Cytoplasmic
 
 
 
 
 
no
yes
IHFB_ECOLI
P0A6Y1
ihfB
b0912 JW0895
cytoplasmic nucleoid peripheral IM protein, Integration host factor subunit beta IhfB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
RPPH_ECOLI
P0A776
rppH
b2830 JW2798
cytoplasmic nucleoid peripheral IM protein, RNA pyrophosphohydrolase RppH
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RECF_ECOLI
P0A7H0
recF
b3700 JW3677
cytoplasmic nucleoid peripheral IM protein, DNA replication and repair RecF
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
Soluble IM Fraction
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
RNC_ECOLI
P0A7Y0
rnc
b2567 JW2551
cytoplasmic nucleoid peripheral IM protein, Ribonuclease 3 Rnc
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
TF
 
 
 
yes
yes
RPOA_ECOLI
P0A7Z4
rpoA
b3295 JW3257
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit alpha RpoA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RPOZ_ECOLI
P0A800
rpoZ
b3649 JW3624
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit omega RpoZ
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
 
 
 
 
yes
yes
RHLB_ECOLI
P0A8J8
rhlB
b3780 JW3753
cytoplasmic nucleoid peripheral IM protein, ATP-dependent RNA helicase RhlB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
yes
yes
MATP_ECOLI
P0A8N0
matP
b0956 JW0939
cytoplasmic nucleoid peripheral IM protein, Macrodomain Ter protein MatP
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
 
 
 
 
 
yes
yes
RRAA_ECOLI
P0A8R0
rraA
b3929 JW3900
cytoplasmic nucleoid peripheral IM protein, Regulator of ribonuclease activity A RraA
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
Cytoplasm
Cytoplasmic
 
 
 
 
 
no
yes
RPOC_ECOLI
P0A8T7
rpoC
b3988 JW3951
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit beta' RpoC
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
RPOB_ECOLI
P0A8V2
rpoB
b3987 JW3950
cytoplasmic nucleoid peripheral IM protein, DNA-directed RNA polymerase subunit beta RpoB
Cytoplasmic, Nucleoid, Peripheral inner membrane protein facing the cytoplasm
A, N, F1
N/A
 
Cytoplasmic
 
TF
 
 
 
yes
yes
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