STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Non-classical secretome   Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Non-classical secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YMGJ_ECOLI
A5A612
ymgJ
b4594
periplasmic protein (SEC through IM), YmgJ
Periplasmic
G
IM (predicted)
 
-
 
 
SEC
 
 
no
yes
SODM_ECOLI
P00448
sodA
b3908 JW3879
periplasmic protein (SEC through IM), Superoxide dismutase SodA
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
ENO_ECOLI
P0A6P9
eno
b2779 JW2750
cytoplasmic peripheral IM protein facing the cytoplasm & peripheral OM protein facing the extra-cellular space (SEC through IM), Enolase Eno
Cytoplasmic, Peripheral inner membrane protein facing the cytoplasm, Peripheral outer membrane protein facing the extra-cellular space
A, F1, F4
Soluble IM Fraction
Cytoplasm; cytoskeleton Secreted Cell surface
Cytoplasmic (Experimental)
 
 
SEC
 
 
yes
yes
LOMR_ECOLI
P77184
lomR
b4570 JW5884/JW5904 b1369/b1371
OM b-barrel protein (SEC through IM), Putative LomR
Outer Membrane b-barrel protein
H
N/A
 
Cytoplasmic
 
 
SEC
 
 
no
no
YAFY_ECOLI
P77365
yafY
b0251 JW0240
IM lipoprotein (SEC through IM, inserted in OM by LOL), YafY
Inner Membrane Lipoprotein
E
N/A
Cell inner membrane
Cytoplasmic
 
 
SEC
 
LOL
no
no
YGFZ_ECOLI
P0ADE8
ygfZ

yzzW

b2898 JW2866
cytoplasmic & periplasmic protein (SEC through IM), tRNA-modifying YgfZ
Cytoplasmic, Periplasmic
A, G
N/A
Cytoplasm
Cytoplasmic (Experimental)
 
 
SEC
 
 
yes
yes
FTSL_ECOLI
P0AEN4
ftsL

mraR yabD

b0083 JW0081
IM lipoprotein (SEC through IM), Cell division FtsL
Inner Membrane Lipoprotein
E
IM (predicted)
Cell inner membrane
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
SODF_ECOLI
P0AGD3
sodB
b1656 JW1648
periplasmic protein (SEC through IM), Superoxide dismutase SodB
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
PNCB_ECOLI
P18133
pncB
b0931 JW0914
periplasmic protein (SEC through IM), Nicotinate phosphoribosyltransferase PncB
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
no
yes
SPEA_ECOLI
P21170
speA
b2938 JW2905
periplasmic protein (SEC through IM), Biosynthetic arginine decarboxylase SpeA
Periplasmic
G
Soluble IM Fraction
Periplasm
Cytoplasmic
 
TF
SEC
 
 
yes
yes
EAEH_ECOLI
P36943
eaeH
b0297 JW0291
periplasmic protein (SEC through IM), Putative attaching and effacing homolog EaeH
Periplasmic
G
N/A
 
Membrane anchored
 
 
SEC
 
 
no
no
YIAD_ECOLI
P37665
yiaD
b3552 JW5657
OM lipoprotein (SEC through IM), inserted in OM by LOL), Probable YiaD
Outer Membrane Lipoprotein
I
N/A
Cell inner membrane
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
RMLA1_ECOLI
P37744
rfbA

rmlA rmlA1

b2039 JW2024
periplasmic protein (SEC through IM), Glucose-1-phosphate thymidylyltransferase 1 RfbA
Periplasmic
G
IM (predicted-detected)
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
YCGI_ECOLI
P76000
ycgI

ymgH

b4521 JW1162/JW5179 b1173
OM b-barrel protein (SEC through IM), T5S secreted through OM), Putative YcgI
Outer Membrane b-barrel protein
H
N/A
 
Cytoplasmic
 
 
SEC
 
Autotransporter(T5S)
no
no
YCGV_ECOLI
P76017
ycgV
b1202 JW1193
OM b-barrel protein (SEC through IM, T5S secreted through OM), YcgV
Outer Membrane b-barrel protein
H
IM (predicted)
 
Cytoplasmic
 
SRP
SEC
 
Autotransporter(T5S)
no
yes
MDTA_ECOLI
P76397
mdtA

yegM

b2074 JW5338
periplasmic peripheral IM protein (SEC through IM), Multidrug resistance MdtA
Peripheral inner membrane protein facing the periplasm
F2
N/A
Cell inner membrane
Membrane anchored
 
 
SEC
 
 
yes
yes
YDEU_ECOLI
P77286
ydeU
b1509 JW1502
OM b-barrel protein (SEC through IM, T5S secreted through OM), YdeU
Outer Membrane b-barrel protein
H
N/A
 
Cytoplasmic
 
 
SEC
 
Autotransporter(T5S)
no
yes
HLYE_ECOLI
P77335
hlyE

clyA hpr sheA ycgD

b1182 JW5181
periplasmic & extra-cellular protein (SEC through IM), secreted in OMV), Hemolysin E, chromosomal HlyE
Periplasmic, Extra-cellular
G, X
N/A
Secreted Periplasm Host cell membrane
Secreted and released (Experimental)
 
 
SEC
 
OMV
no
yes
Records 1 to 18 of 18     
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