STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Non-classical secretome   Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Non-classical secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YMGJ_ECOLI
A5A612
ymgJ
b4594
periplasmic protein (SEC through IM), YmgJ
Periplasmic
G
IM (predicted)
 
-
 
 
SEC
 
 
no
yes
SODM_ECOLI
P00448
sodA
b3908 JW3879
periplasmic protein (SEC through IM), Superoxide dismutase SodA
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
YGFZ_ECOLI
P0ADE8
ygfZ

yzzW

b2898 JW2866
cytoplasmic & periplasmic protein (SEC through IM), tRNA-modifying YgfZ
Cytoplasmic, Periplasmic
A, G
N/A
Cytoplasm
Cytoplasmic (Experimental)
 
 
SEC
 
 
yes
yes
SODF_ECOLI
P0AGD3
sodB
b1656 JW1648
periplasmic protein (SEC through IM), Superoxide dismutase SodB
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
PNCB_ECOLI
P18133
pncB
b0931 JW0914
periplasmic protein (SEC through IM), Nicotinate phosphoribosyltransferase PncB
Periplasmic
G
N/A
 
Cytoplasmic
 
 
SEC
 
 
no
yes
SPEA_ECOLI
P21170
speA
b2938 JW2905
periplasmic protein (SEC through IM), Biosynthetic arginine decarboxylase SpeA
Periplasmic
G
Soluble IM Fraction
Periplasm
Cytoplasmic
 
TF
SEC
 
 
yes
yes
EAEH_ECOLI
P36943
eaeH
b0297 JW0291
periplasmic protein (SEC through IM), Putative attaching and effacing homolog EaeH
Periplasmic
G
N/A
 
Membrane anchored
 
 
SEC
 
 
no
no
RMLA1_ECOLI
P37744
rfbA

rmlA rmlA1

b2039 JW2024
periplasmic protein (SEC through IM), Glucose-1-phosphate thymidylyltransferase 1 RfbA
Periplasmic
G
IM (predicted-detected)
 
Cytoplasmic
 
 
SEC
 
 
yes
yes
HLYE_ECOLI
P77335
hlyE

clyA hpr sheA ycgD

b1182 JW5181
periplasmic & extra-cellular protein (SEC through IM), secreted in OMV), Hemolysin E, chromosomal HlyE
Periplasmic, Extra-cellular
G, X
N/A
Secreted Periplasm Host cell membrane
Secreted and released (Experimental)
 
 
SEC
 
OMV
no
yes
Records 1 to 9 of 9     
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