STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YIIQ_ECOLI
P32160
yiiQ
b3920 JW3891
Uncharacterized protein yiiQ
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
YIIX_ECOLI
P32167
yiiX
b3937 JW3908
Uncharacterized protein yiiX
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
YIJF_ECOLI
P32668
yijF
b3944 JW3916
Uncharacterized protein yijF
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
TRXB_ECOLI
P0A9P4
trxB
b0888 JW0871
Thioredoxin reductase (TRXR) (EC 1.8.1.9)
Periplasmic
G
N/A
Cytoplasm
Cytoplasmic
 
 
SEC
 
 
yes
yes
YEAY_ECOLI
P0AA91
yeaY
b1806 JW1795
Uncharacterized lipoprotein yeaY
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
YAFK_ECOLI
P0AA99
yafK
b0224 JW0214
Putative L,D-transpeptidase YafK (EC 2.-.-.-)
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
YBIS_ECOLI
P0AAX8
ybiS
b0819 JW0803
Probable L,D-transpeptidase YbiS (EC 2.-.-.-)
Peripheral outer membrane protein facing the periplasm
F3
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA
 
yes
yes
YMBA_ECOLI
P0AB10
ymbA
b0952 JW5127
Uncharacterized lipoprotein ymbA
Inner Membrane Lipoprotein
E
N/A
Cell membrane | Lipid-anchor
Cytoplasmic
 
 
SEC
 
LOL
yes
yes
YJAH_ECOLI
P32681
yjaH
b4001 JW3965
Uncharacterized protein yjaH
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
yes
yes
YJBG_ECOLI
P32688
yjbG
b4028 JW3988
Uncharacterized protein yjbG
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
NRFG_ECOLI
P32712
nrfG

yjcN

b4076 JW4037
Formate-dependent nitrite reductase complex subunit nrfG
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
yes
yes
YEHE_ECOLI
P33344
yehE
b2112 JW2099
Uncharacterized protein yegJ
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
EFEO_ECOLI
P0AB24
efeO

ycdO

b1018 JW1003
UPF0409 protein ycdO
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA
 
yes
yes
YCEB_ECOLI
P0AB26
yceB
b1063 JW1050
Uncharacterized lipoprotein yceB
Outer Membrane Lipoprotein
I
Soluble IM Fraction
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
LPOB_ECOLI
P0AB38
lpoB

ycfM

b1105 JW5157
Uncharacterized protein ycfM
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
APBE_ECOLI
P0AB85
apbE

yojK yojL

b2214 JW5368
Thiamine biosynthesis lipoprotein ApbE
Inner Membrane Lipoprotein
E
IM (predicted)
Cell membrane | Lipid-anchor
Inner membrane lipoprotein
 
 
SEC
 
LOL
yes
yes
CSGB_ECOLI
P0ABK7
csgB
b1041 JW1024
Minor curlin subunit
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium. Part of the curli surface structure.
Cell surface appendage (Experimental)
Curli
 
SEC
 
Curli
yes
yes
PPDA_ECOLI
P33554
ppdA
b2826 JW2794
Prepilin peptidase-dependent protein A
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
YBBC_ECOLI
P33668
ybbC
b0498 JW0487
Uncharacterized protein ybbC
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
ASR_ECOLI
P36560
asr
b1597 JW5826
Acid shock protein
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
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