STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(STEPdb)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
OSMY_ECOLI
P0AFH8
osmY
b4376 JW4338
periplasmic & extra-cellular protein (SEC through IM), Osmotically-inducible Y OsmY
Periplasmic, Extra-cellular
G, X
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
YNCH_ECOLI
P76118
yncH
b1455 JW5235
periplasmic protein (SEC through IM), YncH
Periplasmic
G
IM (predicted)
 
Cytoplasmic
 
 
SEC
 
 
no
yes
RZPQ_ECOLI
P76158
rzpQ

ydfP

b1553 JW1545
periplasmic protein (SEC through IM), RzpQ
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
no
PBP7_ECOLI
P0AFI5
pbpG

yohB

b2134 JW5355
periplasmic protein (SEC through IM), D-alanyl-D-alanine endopeptidase PbpG
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
POTD_ECOLI
P0AFK9
potD
b1123 JW1109
periplasmic protein (SEC through IM), Spermidine/putrescine-binding periplasmic PotD
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
PPIA_ECOLI
P0AFL3
ppiA

rot rotA

b3363 JW3326
periplasmic protein (SEC through IM), Peptidyl-prolyl cis-trans isomerase A PpiA
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
PROX_ECOLI
P0AFM2
proX

proU

b2679 JW2654
periplasmic protein (SEC through IM), Glycine betaine/proline betaine-binding periplasmic ProX
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA,DSBA
 
yes
yes
YNFD_ECOLI
P76172
ynfD
b1586 JW5259
periplasmic protein (SEC through IM), YnfD
Periplasmic
G
Soluble IM Fraction
 
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
YDIY_ECOLI
P76206
ydiY
b1722 JW1711
periplasmic protein (SEC through IM), YdiY
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
YNJH_ECOLI
P76227
ynjH
b1760 JW1749
periplasmic protein (SEC through IM), YnjH
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
YECT_ECOLI
P76296
yecT
b1877 JW5310
periplasmic protein (SEC through IM), YecT
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
MEPS_ECOLI
P0AFV4
mepS

spr yeiV

b2175 JW2163
OM lipoprotein (SEC through IM), inserted in OM by LOL), Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase MepS
Outer Membrane Lipoprotein
I
N/A
Cell outer membrane
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
RSEB_ECOLI
P0AFX9
rseB
b2571 JW2555
periplasmic protein (SEC through IM), Sigma-E factor regulatory RseB
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
SUBI_ECOLI
P0AG78
sbp
b3917 JW3888
periplasmic protein (SEC through IM), Sulfate-binding Sbp
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA
 
yes
yes
UGPB_ECOLI
P0AG80
ugpB
b3453 JW3418
periplasmic protein (SEC through IM), sn-glycerol-3-phosphate-binding periplasmic UgpB
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA
 
yes
yes
FLHE_ECOLI
P76297
flhE
b1878 JW1867
periplasmic protein (SEC through IM), FlhE
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
Fla
yes
yes
YECR_ECOLI
P76308
yecR
b1904 JW1892
OM lipoprotein (SEC through IM, inserted in OM by LOL), YecR
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
YOEA_ECOLI
P76356
yoeA
b4582 JW1980 b1995 b1998
OM b-barrel protein (SEC through IM, inserted in OM by BAM), Putative YoeA
Outer Membrane b-barrel protein
H
N/A
 
Outer Membrane ??-barrel protein
 
 
SEC
 
BAM
no
no
PSTS_ECOLI
P0AG82
pstS

phoS

b3728 JW3706
periplasmic protein (SEC through IM), Phosphate-binding PstS
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
TF
SEC
SURA
 
yes
yes
SLT_ECOLI
P0AGC3
slt

sltY

b4392 JW4355
periplasmic protein (SEC through IM), Soluble lytic murein transglycosylase Slt
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
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