STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
YAHO_ECOLI
P75694
yahO
b0329 JW0321
Uncharacterized protein yahO
Periplasmic
G
N/A
Periplasm
Periplasmic
 
 
SEC
 
 
no
yes
YBFN_ECOLI
P75734
ybfN

ybfN

b0682 JW0668
Uncharacterized lipoprotein ybfN
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
UGPB_ECOLI
P0AG80
ugpB
b3453 JW3418
sn-glycerol-3-phosphate-binding periplasmic protein ugpB
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA
 
yes
yes
PSTS_ECOLI
P0AG82
pstS

phoS

b3728 JW3706
Phosphate-binding protein pstS (PBP)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
TF
SEC
SURA
 
yes
yes
SLT_ECOLI
P0AGC3
slt

sltY

b4392 JW4355
Soluble lytic murein transglycosylase (EC 4.2.2.n1) (Exomuramidase) (Peptidoglycan lytic exotransglycosylase) (Slt70)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
MLTF_ECOLI
P0AGC5
mltF

yfhD

b2558 JW2542
Membrane-bound lytic murein transglycosylase F (EC 4.2.2.n1) (Murein lyase F)
Peripheral outer membrane protein facing the periplasm
F3
N/A
Cell outer membrane | Peripheral membrane protein
Periplasmic
 
 
SEC
 
 
no
yes
YBFP_ECOLI
P75737
ybfP
b0689 JW0676
Uncharacterized lipoprotein ybfP
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
GFCC_ECOLI
P75883
gfcC

ymcB

b0985 JW0968
Uncharacterized protein gfcC (Group 4 capsule protein C homolog)
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
YMDA_ECOLI
P75917
ymdA
b1044 JW1031
Uncharacterized protein YmdA
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
SODC_ECOLI
P0AGD1
sodC
b1646 JW1638
Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (Bacteriocuprein)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
MLTC_ECOLI
P0C066
mltC

yggZ

b2963 JW5481
Membrane-bound lytic murein transglycosylase C (EC 4.2.2.n1) (Murein hydrolase C)
Outer Membrane Lipoprotein
I
N/A
Cell outer membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
MEPA_ECOLI
P0C0T5
mepA
b2328 JW2325
Penicillin-insensitive murein endopeptidase (EC 3.4.24.-) (D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBA,DSBC
 
yes
yes
DEGP_ECOLI
P0C0V0
degP

htrA ptd

b0161 JW0157
Periplasmic serine endoprotease DegP
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
SECB
SEC
DSBA
 
yes
yes
FLGA_ECOLI
P75933
flgA
b1072 JW1059
Flagella basal body P-ring formation protein flgA
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
Fla
yes
yes
YCFL_ECOLI
P75946
ycfL
b1104 JW1090
Uncharacterized protein ycfL
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
YCGJ_ECOLI
P76001
ycgJ
b1177 JW1166
Uncharacterized protein ycgJ
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
EMTA_ECOLI
P0C960
emtA

mltE sltZ ycgP

b1193 JW5821
Endo-type membrane-bound lytic murein transglycosylase A (EC 4.2.2.n2) (Peptidoglycan lytic endotransglycosylase)
Outer Membrane Lipoprotein
I
N/A
Cell outer membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
ACFD_ECOLI
P0CK95
yghJ
b4466 JW5925 ECK2968
Putative lipoprotein AcfD homolog
Inner Membrane Lipoprotein
E
N/A
Cell membrane | Lipid-anchor
Inner membrane lipoprotein
 
 
SEC
 
LOL
no
yes
RLPA_ECOLI
P10100
rlpA
b0633 JW0628
Rare lipoprotein A
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
yes
yes
FADL_ECOLI
P10384
fadL

ttr

b2344 JW2341
Long-chain fatty acid transport protein (Outer membrane fadL protein) (Outer membrane flp protein)
Outer Membrane b-barrel protein
H
N/A
Cell outer membrane | Multi-pass membrane protein
Outer Membrane β-barrel protein (Experimental)
 
 
SEC
SURA,SKP
BAM
yes
yes
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