STEPdb: Sub-cellular Topologies of E.coli Polypeptides.

View: E.coli K-12 (MG1655) Sec secretome  Export to Excel  Export to HTML  Export to XML  Export to CSV  

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E.coli K-12 (MG1655) Sec secretome

(mouse over and click on the one letter topology symbols to see which proteins of this specific subproteome are localized in each location)

Bacterial cell cartoon of sub-cellular locations


Protein ID
(Uniprot)
Accession
(Uniprot)
Gene Name
(Uniprot)
Order
Locus Name
Protein Name
(Uniprot)
Full Name
Symbol
Uniprot
EchoLOCATION
Extracellular Appendage
First Level
Targeting
Chaperoning
First Level
Secretion
System
Second Level
Targeting
Chaperoning
Second Level
Secretion
System
K-12 Core
Proteome
(yes/no)
K-12 Basic
Proteome
(yes/no)
HOKC_ECOLI
P0ACG4
hokC

gef

b4412 JW5002 b0018.1
Uncharacterized protein yqeI
Periplasmic
G
N/A
Cell inner membrane | Single-pass type II membrane protein
Periplasmic
 
 
SEC
 
 
no
yes
HOKD_ECOLI
P0ACG6
hokD

relF

b1562 JW1554
Protein hokD (Protein relF)
Periplasmic
G
N/A
Cell membrane | Single-pass membrane protein
Periplasmic
 
 
SEC
 
 
no
no
YDBJ_ECOLI
P0ACW2
ydbJ
b4529 JW5215
Uncharacterized protein ydbJ
Outer Membrane Lipoprotein
I
N/A
 
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
USHA_ECOLI
P07024
ushA
b0480 JW0469
Protein ushA [Includes: UDP-sugar hydrolase (EC 3.6.1.45) (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) (EC 3.1.3.5)]
Periplasmic
G
Soluble IM Fraction
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
no
yes
PPA_ECOLI
P07102
appA
b0980 JW0963
Periplasmic AppA protein [Includes: Phosphoanhydride phosphohydrolase (EC 3.1.3.2) (pH 2.5 acid phosphatase) (AP); 4-phytase (EC 3.1.3.26)]
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
DSBC
 
yes
yes
FIMF_ECOLI
P08189
fimF
b4318 JW4281
Protein fimF
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
FIMG_ECOLI
P08190
fimG
b4319 JW4282
Protein fimG
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
YDCA_ECOLI
P0ACW4
ydcA
b1419 JW1416
Uncharacterized protein ydcA
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
no
yes
OSMB_ECOLI
P0ADA7
osmB
b1283 JW1275
Osmotically-inducible lipoprotein B
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
ECNA_ECOLI
P0ADB4
ecnA
b4410 JW5737
Uncharacterized protein yfeN
Outer Membrane Lipoprotein
I
N/A
Cell membrane | Lipid-anchor
Outer membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
YIDQ_ECOLI
P0ADM4
yidQ
b3688 JW5633
Uncharacterized protein yidQ
Inner Membrane Lipoprotein
E
N/A
 
Outer membrane Lipoprotein(experimental)
 
 
SEC
 
LOL
yes
yes
FIMH_ECOLI
P08191
fimH
b4320 JW4283
Protein fimH
Peripheral outer membrane protein facing the extra-cellular space
F4
N/A
Fimbrium
Cell surface appendage (Experimental)
fimbriae
 
SEC
 
CU
no
yes
CPDB_ECOLI
P08331
cpdB
b4213 JW4171
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase (EC 3.1.3.6) (EC 3.1.4.16)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
SURA
 
no
yes
DACC_ECOLI
P08506
dacC
b0839 JW0823
D-alanyl-D-alanine carboxypeptidase dacC (DD-carboxypeptidase) (DD-peptidase) (EC 3.4.16.4) (Penicillin-binding protein 6) (PBP-6)
Peripheral inner membrane protein facing the periplasm
F2
Soluble IM Fraction
Cell inner membrane | Peripheral membrane protein
Membrane anchored (Experimental)
 
 
SEC
 
 
yes
yes
YIDX_ECOLI
P0ADM6
yidX
b3696 JW5858
Uncharacterized protein yidX
Outer Membrane Lipoprotein
I
N/A
Membrane | Single-pass membrane protein
Outer membrane Lipoprotein
 
 
SEC
 
LOL
no
yes
YIFL_ECOLI
P0ADN6
yifL
b4558 JW3781
Uncharacterized lipoprotein yifL
Outer Membrane Lipoprotein
I
Soluble IM Fraction
Cell membrane | Lipid-anchor
Membrane Lipoprotein (Experimental)
 
 
SEC
 
LOL
no
yes
YGGE_ECOLI
P0ADS6
yggE
b2922 JW2889
Uncharacterized protein yggE
Periplasmic
G
N/A
 
Periplasmic
 
 
SEC
 
 
yes
yes
OMPT_ECOLI
P09169
ompT
b0565 JW0554
Protease 7 (EC 3.4.23.49) (Omptin) (Outer membrane protein 3B) (Protease A) (Protease VII)
Outer Membrane b-barrel protein
H
Soluble IM Fraction
Cell outer membrane | Multi-pass membrane protein
Outer Membrane β-barrel protein (Experimental)
 
SECB,TF
SEC
 
BAM
no
no
GLPQ_ECOLI
P09394
glpQ
b2239 JW2233
Glycerophosphoryl diester phosphodiesterase (Glycerophosphodiester phosphodiesterase) (EC 3.1.4.46)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
ARGT_ECOLI
P09551
argT
b2310 JW2307
Lysine-arginine-ornithine-binding periplasmic protein (LAO-binding protein)
Periplasmic
G
N/A
Periplasm
Periplasmic (Experimental)
 
 
SEC
 
 
yes
yes
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